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Ticket Summary Owner Type Priority Milestone Component
#4 Waves compilation problem arango defect blocker Release ROMS/TOMS 3.1 component1
#27 change to mod_ncparam.F broke my ROMS_APPLICATION ?= WAKE case arango bug critical Release ROMS/TOMS 3.1 Nonlinear
#30 Memory Leak in the Lanczos Algorithm arango bug critical Adjoint Based Algorithms Adjoint
#96 Bug in inp_par.F for sediment runs with no cohesive sediment arango bug critical Release ROMS/TOMS 3.1 Nonlinear
#449 Floating point exceptions related to GLS_MIXING and PERFECT_RESTART arango bug critical Release ROMS/TOMS 3.4 Nonlinear
#671 A small bug in mod_boundary.F arango bug critical Adjoint Based Algorithms Adjoint
#1 Perfect Restart arango request major Release ROMS/TOMS 3.1 Nonlinear
#3 typo in tl_zetabc.F arango defect major Adjoint Based Algorithms Adjoint
#5 Maximum number of tidal constituents arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#6 Parallel bug in point data processing arango defect major Release ROMS/TOMS 3.1 Parallelism
#7 Scrambled declarations in ad_forcing.F when ASSUMED_SHAPE active arango defect major Adjoint Based Algorithms Adjoint
#9 A couple more declaration problems arango bug major Adjoint Based Algorithms Adjoint
#11 Declaration problem in set_avg.F arango bug major Release ROMS/TOMS 3.1 Nonlinear
#12 And another 3 declaration problems arango bug major Release ROMS/TOMS 3.1 Nonlinear
#13 problem with inp_par.F arango bug major Release ROMS/TOMS 3.1 Coupling
#14 SWAN / ROMS coupling problem arango request major Release ROMS/TOMS 3.1 Coupling
#15 Make dependencies arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#16 Split get_data arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#17 Typo in set_data.F routines. arango bug major Release ROMS/TOMS 3.1 Nonlinear
#19 Errors in CPP logic in set_vbc.F arango bug major Release ROMS/TOMS 3.1 Nonlinear
#20 Application header file arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#21 Corrected few bugs arango bug major Release ROMS/TOMS 3.1 Nonlinear
#22 Allow non-standard location for Perl interpreter throughout arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#23 Miscellaneous fixes to Functionals files arango bug major Release ROMS/TOMS 3.1 Nonlinear
#25 Declaration problem in cgradient.h arango bug major Release ROMS/TOMS 3.1 Nonlinear
#26 ROMS fails to initialize in parallel with point sources/sink arango bug major Release ROMS/TOMS 3.1 Nonlinear
#28 Application ADRIA02 and river arango bug major Release ROMS/TOMS 3.1 Nonlinear
#29 Bugs in Master/mct_roms_wrf.h arango bug major Release ROMS/TOMS 3.1 Nonlinear
#31 ana_psource.h problem arango bug major Release ROMS/TOMS 3.1 Nonlinear
#32 Control application cpp flags from make command line arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#34 Problem in cgradient.F when not using LANCZOS arango bug major Adjoint Based Algorithms Adjoint
#35 a bug in optobs_ocean.h arango bug major Adjoint Based Algorithms Adjoint
#36 Hessian eigenvectors bug arango bug major Adjoint Based Algorithms Adjoint
#38 Determining number of threads in OpenMP run arango bug major Release ROMS/TOMS 3.1 Nonlinear
#39 Number of Hessian eigenvectors arango upgrade major Adjoint Based Algorithms Adjoint
#40 Occurences of MY_APPLICATION arango bug major Release ROMS/TOMS 3.1 Nonlinear
#42 Plotting user polylines in different colors Arango upgrade major Plotting Package Plotting
#43 restart for sed morph jcwarner bug major Release ROMS/TOMS 3.1 Sediment
#44 RitzEV arango bug major Adjoint Based Algorithms Adjoint
#45 problem with link to "Hernan's handwritten notes" on ROMS web page arango bug major Release ROMS/TOMS 3.1 Website
#46 Allocation of Ritz variable arango bug major Adjoint Based Algorithms Adjoint
#47 NetCDF F90 interface arango upgrade major Parallel Input/Output Parallelism
#48 ocean_avg.nc missing bottom stress arango request major Release ROMS/TOMS 3.1 Nonlinear
#49 Compilation error when no ANA_* options defined arango bug major Release ROMS/TOMS 3.1 Nonlinear
#50 NetCDF f90 problems on Cray T3E arango bug major Parallel Input/Output Parallelism
#51 Closed/Gradient Conditions in bc_2d.F and bc_3d.F arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#54 typo in wrt_info.F arango bug major Release ROMS/TOMS 3.1 Nonlinear
#55 Suggestion for 30% faster compiles of forward model arango request major Release ROMS/TOMS 3.1 Nonlinear
#57 Missing declaration of tl_srflx array arango bug major Adjoint Based Algorithms Adjoint
#58 Native MPI libraries with PGI compiler arango bug major Release ROMS/TOMS 3.1 Parallelism
#59 q_psource arango bug major Release ROMS/TOMS 3.1 Nonlinear
#61 NEMURO model arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#65 makefile library access arango bug major Release ROMS/TOMS 3.1 Nonlinear
#66 4DVAR surface forcing minimization arango bug major Adjoint Based Algorithms Adjoint
#67 Problem in allocation of t_west_C* arango bug major Adjoint Based Algorithms Adjoint
#70 current version does not link to the ADM and TLM libraries when compiling arango bug major Release ROMS/TOMS 3.1 Nonlinear
#71 Variables t_east_C* arango bug major Adjoint Based Algorithms Adjoint
#73 wpoint problem arango defect major Release ROMS/TOMS 3.1 Nonlinear
#74 TS_MPDATA, tl_Hz compiling problem arango defect major Adjoint Based Algorithms Adjoint
#75 TS_MPDATA, Further leftovers? arango defect major Adjoint Based Algorithms Adjoint
#76 TS_MPDATA, Missed declaration arango defect major Adjoint Based Algorithms Adjoint
#77 TS_MPDATA, Missing function? arango defect major Adjoint Based Algorithms Adjoint
#78 Typo in routine stats_modobs arango bug major Release ROMS/TOMS 3.1 Nonlinear
#79 Lower and upper bounds indices arango upgrade major Nesting/Composed Grids Nonlinear
#80 Typo in option ADJUST_WSTRESS arango bug major Adjoint Based Algorithms Adjoint
#84 regrid wrong dimension arango bug major Release ROMS/TOMS 3.1 Nonlinear
#85 Several bugs in 4DVAR when adjusting surface fluxes arango bug major Adjoint Based Algorithms Adjoint
#86 NEMURO model input file arango bug major Release ROMS/TOMS 3.1 Nonlinear
#88 4DVAR surface forcing corrections arango upgrade major Adjoint Based Algorithms Adjoint
#89 Small adjoint bug and few typos arango bug major Adjoint Based Algorithms Adjoint
#93 swan collection of final data arango bug major Release ROMS/TOMS 3.1 Nonlinear
#95 wvelocity arango bug major Release ROMS/TOMS 3.1 Nonlinear
#97 Nemuro model corrections arango bug major Release ROMS/TOMS 3.1 Nonlinear
#98 Zooplankton half-saturation ingestion constant arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#99 Parallel bug in mp_exchange4d, please update your code! arango bug major Release ROMS/TOMS 3.1 Nonlinear
#100 Parallel bug in SWAN arango bug major Release ROMS/TOMS 3.1 Parallelism
#104 combo of LMD and WET_DRY blows up arango bug major Release ROMS/TOMS 3.1 Nonlinear
#105 BKPP error on my part arango bug major Release ROMS/TOMS 3.1 Nonlinear
#106 Observation operator arango bug major Adjoint Based Algorithms Adjoint
#107 def_rst patch for WET_DRY in 2d simulations arango bug major Release ROMS/TOMS 3.1 Nonlinear
#109 Fixes to 4DVAR surface fluxes estimation arango upgrade major Adjoint Based Algorithms Adjoint
#110 4DVAR observation processing, shallow water model arango bug major Adjoint Based Algorithms Adjoint
#111 Adjoint radiation boundary conditions arango bug major Adjoint Based Algorithms Adjoint
#112 Parabolic splines vertical diffusion convolution, 4DVAR arango upgrade major Adjoint Based Algorithms Adjoint
#113 Fasham model, oxygen sink by zooplakton arango bug major Release ROMS/TOMS 3.1 Nonlinear
#114 Adjoint bug in point sources arango bug major Adjoint Based Algorithms Adjoint
#115 Detided time-averaged fields arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#116 Shortwave and longwave radiation parameterizations arango bug major Release ROMS/TOMS 3.1 Nonlinear
#118 Bug in 2D momentum reduced physics open boundary conditions arango bug major Release ROMS/TOMS 3.1 Nonlinear
#119 Added Copyright script arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#120 Potential problem during processing of 4DVAR observation arango bug major Adjoint Based Algorithms Adjoint
#121 Few bugs in 4DVAR surface fluxes estimation arango bug major Adjoint Based Algorithms Adjoint
#123 Inconsistent time_ref arango bug major Release ROMS/TOMS 3.1 Nonlinear
#126 Time-variable 4DVAR surface forcing adjustment arango upgrade major Adjoint Based Algorithms Adjoint
#127 Screening for unphysical currents and density in diag.F arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#129 Few performance optimizations arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#133 Typo in inp_par.F stations output fields switch arango bug major Release ROMS/TOMS 3.1 Nonlinear
#134 Float restart (FRREC) does not work arango bug major Release ROMS/TOMS 3.1 Nonlinear
#135 Updated ROMS plotting package arango upgrade major Plotting Package Plotting
#137 Suppress output files if writing interval is zero arango request major Release ROMS/TOMS 3.1 Nonlinear
#138 Updated all biology models arango bug major Release ROMS/TOMS 3.1 Nonlinear
#140 Updated several algorithms arango upgrade major Release ROMS/TOMS 3.1 Nonlinear
#141 Tagged latest repository version as ROMS 3.1 arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#142 Upgraded model to include nesting and ESMF drivers arango upgrade major Nesting/Composed Grids Nonlinear
#144 Updated model coupling using the MCT library arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#146 Updated SWAN model to version 40.51 arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#149 Time dependent horizontal diffusion/viscosity coefficients arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#150 Corrected allocation of coupling structures Export and Import arango defect major Release ROMS/TOMS 3.2 Nonlinear
#154 spec2d SWAN ifort arango bug major Release ROMS/TOMS 3.2 Coupling
#155 maxrho/maxspeed bug for multiple serial tiles arango bug major Release ROMS/TOMS 3.2 Nonlinear
#157 bad old info in floats.in documentation arango bug major Release ROMS/TOMS 3.2 Nonlinear
#158 4DVAR Balance Operator arango upgrade major Adjoint Based Algorithms Adjoint
#159 Typo in ana_m2obc Kelvin wave test arango bug major Release ROMS/TOMS 3.2 Nonlinear
#162 bulk_flux itermax arango bug major Release ROMS/TOMS 3.2 Nonlinear
#163 Small bug in the observation verification arango bug major Release ROMS/TOMS 3.2 Nonlinear
#164 Segmentation fault in tl_lmd_swfrac.F arango bug major Adjoint Based Algorithms Adjoint
#166 Update internal ROMS NetCDF module arango upgrade major Parallel Input/Output Parallelism
#167 Observation sensitivity driver plus adjust forcing update arango upgrade major Adjoint Based Algorithms Adjoint
#168 Few corrections to tickets 166 and 167 arango bug major Release ROMS/TOMS 3.2 Nonlinear
#170 Couple of corrections and more updates arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#172 Several updates to surface forcing adjustment and exit_flag arango upgrade major Adjoint Based Algorithms Adjoint
#175 Error while writing Hessian eigenvalues arango bug major Adjoint Based Algorithms Adjoint
#176 using full compiler path arango bug major Release ROMS/TOMS 3.2 Nonlinear
#177 Type in gls_corstep.F and ana_srflux arango bug major Release ROMS/TOMS 3.2 Nonlinear
#178 tile bug in ini_fields arango bug major Release ROMS/TOMS 3.2 Nonlinear
#180 sediment.F restructuring arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#181 SWAN coupling mpi_finalize arango bug major Release ROMS/TOMS 3.2 Nonlinear
#182 Incorrect FORMAT statement number in def_floats.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#183 Corrections to read_FloatsPar in inp_par.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#184 Big IO update, parallel synchronization arango upgrade major Parallel Input/Output Parallelism
#185 IS4DVAR preconditioning arango upgrade major Adjoint Based Algorithms Adjoint
#186 Missing h variable in ini_zeta routine arguments arango bug major Release ROMS/TOMS 3.2 Nonlinear
#187 bug in shapiro filter option for LMD_BKPP arango bug major Release ROMS/TOMS 3.2 Nonlinear
#188 Misplaced #endif in def_floats.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#189 Few corrections to big IO update arango bug major Release ROMS/TOMS 3.2 Nonlinear
#190 update estuary test arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#191 Table output for SWAN coupling arango bug major Release ROMS/TOMS 3.2 Nonlinear
#193 Private automatic arrays arango upgrade major Nesting/Composed Grids Nonlinear
#194 Couple of bugs in tl_def_his.F and tl_main2d.F arango bug major Adjoint Based Algorithms Adjoint
#195 OpenMP undeclared variables arango bug major Release ROMS/TOMS 3.2 Nonlinear
#197 Observation Sensitivity bug arango bug major Adjoint Based Algorithms Adjoint
#198 Initialization problem arango bug major Release ROMS/TOMS 3.2 Nonlinear
#199 Few corrections to the Observation Sensitivity driver arango upgrade major Adjoint Based Algorithms Adjoint
#201 Spectral and Ritz 4DVAR preconditioning arango upgrade major Adjoint Based Algorithms Adjoint
#202 Sediment-related bugs arango bug major Release ROMS/TOMS 3.2 Nonlinear
#206 Fixes to normalization.F and def_info.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#208 Corrected model/observations statistics arango bug major Adjoint Based Algorithms Adjoint
#209 FLT_TEST 3D with MPI, out of bounds access in isobaric correction arango bug major Release ROMS/TOMS 3.2 Nonlinear
#210 ESTUARY_TEST sediment-related bugs arango bug major Release ROMS/TOMS 3.2 Nonlinear
#211 KELVIN test case blows up arango bug major Release ROMS/TOMS 3.2 Nonlinear
#213 Typo in formula for SST nudging/OI arango bug major Release ROMS/TOMS 3.2 Nonlinear
#215 Multiple Hessian files arango upgrade major Adjoint Based Algorithms Adjoint
#216 Bugs in hmixing.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#217 Cray T3E with MPI: error writing to history file arango bug major Release ROMS/TOMS 3.2 Nonlinear
#219 Coefficients not initialised in step_floats.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#220 Term diagnostics time arango defect major Release ROMS/TOMS 3.2 Nonlinear
#221 NEMURO bug in large phytoplankton primary productivity arango bug major Release ROMS/TOMS 3.2 Nonlinear
#222 _FillValue for Land Masked in Output NetCDF arango request major Release ROMS/TOMS 3.2 Nonlinear
#223 Problem with masked grid arrays in output NetCDF files arango bug major Release ROMS/TOMS 3.2 Nonlinear
#224 READ/WRITE_WATER problems arango bug major Release ROMS/TOMS 3.2 Nonlinear
#226 _FillValue logic in output NetCDF files arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#227 INLET_TEST failure due to src:ticket:214 arango bug major Release ROMS/TOMS 3.2 Nonlinear
#228 Pointer association arguments to nf_fwrite*d routines arango bug major Release ROMS/TOMS 3.2 Nonlinear
#232 IS4VAR Revisited: Preconditioning arango upgrade major Adjoint Based Algorithms Adjoint
#233 Removed is4dvar_ocean.h Driver arango upgrade major Adjoint Based Algorithms Adjoint
#234 Pointer association in nf_fread*d routines arango bug major Release ROMS/TOMS 3.2 Nonlinear
#235 Memory leak when activating READ_WATER arango bug major Release ROMS/TOMS 3.2 Nonlinear
#236 Corrected 4DVAR observation operator arango bug major Adjoint Based Algorithms Adjoint
#237 Missing arguments in wrt_hessian.F arango bug major Adjoint Based Algorithms Adjoint
#238 Problem in input routines nf_fread*d when scale is not unity arango bug major Release ROMS/TOMS 3.2 Nonlinear
#240 Updated 4DVar observation operator arango upgrade major Adjoint Based Algorithms Adjoint
#241 Updated 4DVar surface forcing adjustment arango defect major Adjoint Based Algorithms Adjoint
#242 Updated weak constraint 4DVAR impulse forcing arango upgrade major Adjoint Based Algorithms Adjoint
#245 Miscellaneous updates arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#246 Bug in representer model 2D boundary conditions arango bug major Adjoint Based Algorithms Adjoint
#248 Updated output to NetCDF-4/HDF5 format file arango upgrade major Parallel Input/Output Parallelism
#249 Updated plotting package make configuration files arango upgrade major Plotting Package Plotting
#250 ANA_PASSIVE no longer working? arango defect major Release ROMS/TOMS 3.2 Nonlinear
#251 Surface fluxes adjustment in W4DVAR and W4DPSAS arango upgrade major Adjoint Based Algorithms Adjoint
#252 Typo in inp_par.F for NEMURO model input pamereters arango bug major Release ROMS/TOMS 3.2 Nonlinear
#253 Wrong index in ana_nudgcoef.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#254 Preconditioning in weak-constraint data assimilation algorithms arango upgrade major Adjoint Based Algorithms Adjoint
#256 Customized Biology/Ecosystem models arango request major Release ROMS/TOMS 3.2 Nonlinear
#257 Parallel bug in ana_nudgcoef.h arango bug major Release ROMS/TOMS 3.2 Nonlinear
#258 W4DPSAS revisited arango upgrade major Adjoint Based Algorithms Adjoint
#259 Corrected bug in wrt_impulse.F arango bug major Adjoint Based Algorithms Adjoint
#260 Bug in tl_initial.F arango bug major Adjoint Based Algorithms Adjoint
#261 Updated NetCDF IO gather/scatter arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#263 Big update due to IO parallelization and data assimilation arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#265 Few corrections to ticket src:ticket:263 arango bug major Release ROMS/TOMS 3.2 Nonlinear
#268 3D U variables misaligned with INLINE_2DIO arango bug major Release ROMS/TOMS 3.2 Nonlinear
#269 Tidal forcing data not being read from forcing file arango bug major Release ROMS/TOMS 3.2 Nonlinear
#270 ROMS parallel I/O using the NetCDF-4/HDF5 libraries arango upgrade major Parallel Input/Output Parallelism
#271 Interpolation problem in regrid arango bug major Parallel Input/Output Parallelism
#272 Updated parallel I/O to support read/write of water points only arango upgrade major Parallel Input/Output Parallelism
#273 Allow or not processing of ghost points during reading/scattering arango defect major Parallel Input/Output Parallelism
#274 Avoid time checking on frequency variables arango defect major Release ROMS/TOMS 3.2 Nonlinear
#275 Corrected I/O bug when periodic conditions are activated arango bug major Parallel Input/Output Parallelism
#276 Corrected problem in Parallel I/O arango bug major Parallel Input/Output Parallelism
#277 Need to broadcast file names in parallel I/O arango bug major Parallel Input/Output Parallelism
#278 Corrected out-of-bound error in get_state.F arango bug major Adjoint Based Algorithms Adjoint
#279 Corrected bug in the creation of the 4DVAR normalization file arango bug major Adjoint Based Algorithms Adjoint
#280 Corrected parallel bug in white_noise.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#281 CF compliance arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#282 4DVAR adjustment of open boundaries arango upgrade major Adjoint Based Algorithms Adjoint
#284 Use of boundary arrays arango defect major Release ROMS/TOMS 3.2 Nonlinear
#287 Updated EcoSim vertical sinking arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#288 Loaded wrong ad_set_depth.F file in ticket 285 arango bug major Adjoint Based Algorithms Adjoint
#289 Terrain-following vertical coordinate overhaul arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#291 Corrected bug in sed_settling.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#292 Round-off problems in netcdf_check_var arango defect major Release ROMS/TOMS 3.2 Nonlinear
#293 Missing declaration in mod_fourdvar.F arango bug major Release ROMS/TOMS 3.2 Nonlinear
#294 Released Matlab processing scripts arango upgrade major Matlab Processing Scripts Matlab
#295 Updated vertical coordinates computation in ROMS plotting package arango upgrade major Plotting Package Plotting
#296 Updated matlab/seawater toolbox arango upgrade major Matlab Processing Scripts Matlab
#297 netcdf fill value for wetdry arango bug major Release ROMS/TOMS 3.2 Nonlinear
#298 Need to set critical depth (hc) for other transformations arango bug major Release ROMS/TOMS 3.2 Nonlinear
#301 Observation sensitivity for W4DPSAS and W4DVAR arango upgrade major Adjoint Based Algorithms Adjoint
#302 Added scripts to process initial conditions arango upgrade major Matlab Processing Scripts Matlab
#303 Surface atmospheric pressure forcing arango upgrade major Release ROMS/TOMS 3.2 Nonlinear
#304 Another correction to the surface tracer 4DVAR adjustment arango bug major Adjoint Based Algorithms Adjoint
#305 Tagged latest repository version as ROMS 3.2 arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#306 Corrected typo in prsgrd31 arango bug major Release ROMS/TOMS 3.3 Nonlinear
#307 Added missing day_code.m arango request major Matlab Processing Scripts Matlab
#308 WET_DRY free-surface boundary data arango defect major Release ROMS/TOMS 3.3 Nonlinear
#309 Sediment bottom properties initial conditions logic arango bug major Release ROMS/TOMS 3.3 Nonlinear
#310 Misplaced CPP conditional in normalization.F arango bug major Adjoint Based Algorithms Adjoint
#313 WET_DRY problem for Vstretching=2,3 in set_scoord.F arango bug major Release ROMS/TOMS 3.3 Nonlinear
#314 wet_dry v2dbc arango bug major Release ROMS/TOMS 3.3 Nonlinear
#315 Wrong CPP directive in congrad.F arango bug major Adjoint Based Algorithms Adjoint
#316 Upated matlab scripts to compute ROMS vertical coorditnates arango defect major Matlab Processing Scripts Matlab
#318 Updated 4DVAR adjustment of open boundaries arango upgrade major Adjoint Based Algorithms Adjoint
#320 More corrections to the 4DVAR adjustment of open boundaries arango bug major Adjoint Based Algorithms Adjoint
#322 Missing index in 4DVAR boundary adjustments arango bug major Adjoint Based Algorithms Adjoint
#323 sediment restart arango bug major Release ROMS/TOMS 3.3 Nonlinear
#324 Corrected bugs in 4DVAR adjustment of open boundaries arango bug major Adjoint Based Algorithms Adjoint
#325 4DVAR posterior error covariance matrix arango upgrade major Adjoint Based Algorithms Adjoint
#327 Observation impact to the 4DVAR data assimilation systems arango upgrade major Adjoint Based Algorithms Adjoint
#328 Added seagrid/presto and mex directories to Matlab scripts repositry arango upgrade major Matlab Processing Scripts Matlab
#330 Ligth formulation in ROMS biology models arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#331 Corrected parallel bug in random_ic.F arango bug major Adjoint Based Algorithms Adjoint
#332 Update to makefile, build and compilation scripts arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#333 Full 4DVAR posterior error convarinace diagonal matrix arango upgrade major Adjoint Based Algorithms Adjoint
#334 Added new matlab processing scripts arango upgrade major Matlab Processing Scripts Matlab
#335 Corrected typo in npzd_iron.in arango bug major Release ROMS/TOMS 3.3 Nonlinear
#336 Corrected bug in 4DVAR multiple outer loops arango bug major Adjoint Based Algorithms Adjoint
#337 backgound/foreground colors in black/white plotting programs arango request major Plotting Package Plotting
#338 Added new matlab scripts arango upgrade major Matlab Processing Scripts Matlab
#339 Incorrect logic in get_ngfld arango bug major Release ROMS/TOMS 3.3 Nonlinear
#340 Corrected bug in quadratic bottom stress for ice cavitiies arango bug major Release ROMS/TOMS 3.3 Nonlinear
#341 Corrections to adjoint of npzd_iron.h and npzd_Powell.h arango bug major Adjoint Based Algorithms Adjoint
#342 4DVar Balance Operator arango upgrade major Adjoint Based Algorithms Adjoint
#343 Tracer advection in adjoint-based algorithms arango request major Adjoint Based Algorithms Adjoint
#344 Corrected release of Lagrangian drifters and parallel bug arango bug major Release ROMS/TOMS 3.3 Nonlinear
#345 Problem with NetCDF variables with more than 15 characters in plotting package arango defect major Plotting Package Plotting
#346 Corrected parallel bugs in ana_psource.h arango bug major Release ROMS/TOMS 3.3 Nonlinear
#349 4DVar unbalanced error covariance standard deviation scripts arango upgrade major Matlab Processing Scripts Matlab
#350 set_data: subscript out of range arango bug major Release ROMS/TOMS 3.3 Nonlinear
#351 Added missing CPP directives arango bug major Adjoint Based Algorithms Adjoint
#352 Corrected bugs in Matlab script uv_balance.m arango bug major Matlab Processing Scripts Matlab
#353 Failure from wrt_stations.F when LdefSTA is false. arango bug major Release ROMS/TOMS 3.3 Nonlinear
#354 Few corrections to balance operator arango bug major Adjoint Based Algorithms Adjoint
#355 Corrected Matlab scripts used in balance operator arango bug major Matlab Processing Scripts Matlab
#356 Added capability to process the add_offset attribute in input NetCDF files arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#358 Expanded use of add_offset and scale_factor arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#359 Corrected bug in nf_fread2d_bry and nf_fread3d_bry arango bug major Release ROMS/TOMS 3.3 Nonlinear
#360 New Biology and Sediment sub-directories arango request major Release ROMS/TOMS 3.3 Nonlinear
#362 Corrected balance_4dvar.m script arango bug major Matlab Processing Scripts Matlab
#363 Corrected a bug in get_cycle.F when processing timeless variables arango bug major Release ROMS/TOMS 3.3 Nonlinear
#364 Updated balance operator input parameters arango upgrade major Adjoint Based Algorithms Adjoint
#365 Corrected several bug in the 4DVar algorithms arango bug major Adjoint Based Algorithms Adjoint
#368 bulk fluxes and adjoint-based algorithms arango upgrade major Adjoint Based Algorithms Adjoint
#370 Updated adjoint model impulse forcing and climatology mixing arango upgrade major Adjoint Based Algorithms Adjoint
#371 Expanded NL_BULK_FLUXES to other algorithms arango upgrade major Adjoint Based Algorithms Adjoint
#372 Call bulk_flux only in the first run of the nonlinear model arango upgrade major Adjoint Based Algorithms Adjoint
#373 Level of no motion in 4DVar Balance Operator arango upgrade major Adjoint Based Algorithms Adjoint
#374 WARNING: Corrected BUG in scale_factor attribute for input NetCDF files arango bug major Release ROMS/TOMS 3.3 Nonlinear
#375 Generalized coupled biology and sediment models interface arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#376 IMPORTANT: New parameters in input script files arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#377 make bug on cygwin arango bug major Release ROMS/TOMS 3.3 Nonlinear
#378 SOURCE(ng)%Ltracer and SOURCE(ng)%Lsrc arango bug major Release ROMS/TOMS 3.3 Nonlinear
#380 Operations on uninitialized data in NETCDF_GET_FVAR_1D arango bug major Release ROMS/TOMS 3.3 Nonlinear
#381 Corrected bug in ini_hmixcoef.F arango bug major Release ROMS/TOMS 3.3 Nonlinear
#382 Observation Impact, OBS_IMPACT_SPLIT arango upgrade major Adjoint Based Algorithms Adjoint
#383 Miscelaneous bugs arango bug major Release ROMS/TOMS 3.3 Nonlinear
#384 Incorrectly coded option UV_PSOURCE in step2d_LF_AM3.h arango bug major Adjoint Based Algorithms Adjoint
#385 Bug in def_rst.F for perfect restart in 2D configurations arango bug major Release ROMS/TOMS 3.3 Nonlinear
#386 Input parameters scripts and the KEYWORD arango defect major Release ROMS/TOMS 3.3 Nonlinear
#387 Corrected typo in observations impact variables arango bug major Adjoint Based Algorithms Adjoint
#388 Generalized coupled biology and sediment models interface, final phase arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#389 Added observation impact capability for IS4DVAR arango upgrade major Adjoint Based Algorithms Adjoint
#390 Added new output variables to ocean.in and stations.in arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#391 Override of DU_avg1 and DV_avg1 when using UV_PSOURCE arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#392 Cleaned repository and updated Copyright header arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#393 Corrected bug in sediment metadata arango bug major Release ROMS/TOMS 3.3 Nonlinear
#394 Renamed flag OBS_SENSITIVITY arango upgrade major Adjoint Based Algorithms Adjoint
#395 Updated CYGWIN-ifort.mk arango upgrade major Release ROMS/TOMS 3.3 Nonlinear
#396 Tagged latest repository version as ROMS 3.3 arango release major Release ROMS/TOMS 3.4 Release
#397 Added indices to plot term diagnostics arango upgrade major Plotting Package Plotting
#398 Updated Copyright for the matlab scripts repository arango upgrade major Matlab Processing Scripts Matlab
#399 Corrected vertical integration in balance operator arango defect major Adjoint Based Algorithms Adjoint
#400 Corrected typo in varinfo.dat (sand_north_ variable) arango bug major Release ROMS/TOMS 3.4 Nonlinear
#401 River runoff metadata typo in sediment_var.h arango bug major Release ROMS/TOMS 3.4 Nonlinear
#402 Input NetCDF files for BIO_TOY test case arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#403 Bug in ini_hmixcoef.F arango bug major Release ROMS/TOMS 3.4 Nonlinear
#404 Wrong angle in radiation_stress arango bug major Release ROMS/TOMS 3.4 Nonlinear
#405 Momentun and tracer equations diagnostic terms revisited arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#406 radiation_stress.F angle incorrecly adjusted !!!!! arango bug major Release ROMS/TOMS 3.4 Nonlinear
#407 Subscript of range for DiaU2rhs and DiaV2rhs arango bug major Release ROMS/TOMS 3.4 Nonlinear
#408 Corrected bug in get_ngfld.F and get_ngfldr.F arango bug major Release ROMS/TOMS 3.4 Nonlinear
#409 SWAN - MCT coupling memory bug arango bug major Release ROMS/TOMS 3.4 Nonlinear
#410 Missing metadata for river runoff and inert passive tracers arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#411 Removed obsolete option NUDGING_SSH arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#412 Corrected typo in inp_par.F for passive inert tracers arango bug major Release ROMS/TOMS 3.4 Nonlinear
#413 Corrected a problem when using get_state and netcdf_close arango bug major Release ROMS/TOMS 3.4 Nonlinear
#414 diagnostic bugs - several arango bug major Release ROMS/TOMS 3.4 Nonlinear
#416 Corrected an adjoint bug in NPZD_IRON arango bug major Adjoint Based Algorithms Adjoint
#417 A small bug in obs_sen_is4dvar.h arango bug major Adjoint Based Algorithms Adjoint
#418 Input NetCDF files from an OPeNDAP server arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#419 Logic with the 256 characters file names arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#420 Reverted change for NPZD_IRON arango bug major Adjoint Based Algorithms Adjoint
#421 Averages and diagnostics output files revisited arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#422 Typo in Dout(iTvadv) arango bug major Release ROMS/TOMS 3.4 Nonlinear
#423 Missing module reference in ana_tobc.h arango bug major Release ROMS/TOMS 3.4 Nonlinear
#424 Tuned parallel I/O capabilities arango upgrade major Parallel Input/Output Parallelism
#425 Corrected typo in inp_par.F arango bug major Release ROMS/TOMS 3.4 Nonlinear
#426 small def_avg bug arango bug major Release ROMS/TOMS 3.4 Nonlinear
#427 Missing logic vertical viscosity diagnostics in inp_param.F arango bug major Release ROMS/TOMS 3.4 Nonlinear
#428 Stabilized Rpresenter Matrix Array Modes and Clipped Analysis arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#429 Missing END IF in def_avg.F arango bug major Release ROMS/TOMS 3.4 Nonlinear
#430 Updates several 4DVAR algorithms arango bug major Release ROMS/TOMS 3.4 Nonlinear
#431 Adding test directory to repository arango upgrade major Test Cases Test Cases
#432 Load 4D-Var test cases arango upgrade major Test Cases Test Cases
#433 Updated plotting scripts in 4D-Var tests arango upgrade major Test Cases Test Cases
#434 Added missing files in the 4D-Var test arango upgrade major Test Cases Test Cases
#435 Updated inp_par.F and added new job scripts arango upgrade major Adjoint Based Algorithms Adjoint
#436 Corrected a bug in the PSAS 4D-Var algorithms arango bug major Adjoint Based Algorithms Adjoint
#437 Updated documentation in 4D-Var test cases arango upgrade major Test Cases Test Cases
#438 Update ROMS plotting package arango upgrade major Plotting Package Plotting
#439 Update all Readme files in 4D-Var Test Cases arango upgrade major Test Cases Test Cases
#440 Declaration error in set_avg.F arango bug major Release ROMS/TOMS 3.4 Nonlinear
#441 Bug in plotting package, opencdf.F arango bug major Plotting Package Plotting
#442 Updated plotting package, hbackground.F arango upgrade major Plotting Package Plotting
#443 Important: updated matlab scripts repository arango upgrade major Matlab Processing Scripts Matlab
#444 Updated 4D-Var test cases arango upgrade major Test Cases Test Cases
#445 Added scripts to compute 4D-Var error covariance standard deviation arango upgrade major Matlab Processing Scripts Matlab
#446 Added scripts in the matlab/4dvar directory arango upgrade major Matlab Processing Scripts Matlab
#447 More fine tuning of several matlab scripts arango upgrade major Matlab Processing Scripts Matlab
#448 Added global attribute "grid_Lm_Mm_N" to observation file arango upgrade major Test Cases Test Cases
#450 Bug in set_avg.F and typo on wrt_tides arango bug major Release ROMS/TOMS 3.4 Nonlinear
#451 Corrected typo in plot_super.m arango bug major Matlab Processing Scripts Matlab
#452 Corrected bug in c_std_bry.m arango bug major Matlab Processing Scripts Matlab
#453 Corrected a bug in the correlation and normalization driver arango bug major Adjoint Based Algorithms Adjoint
#454 added driver d_std_obc.m arango upgrade major Matlab Processing Scripts Matlab
#455 Corrected a bug in correlation.h arango bug major Adjoint Based Algorithms Adjoint
#456 Added obs_depth.m arango upgrade major Matlab Processing Scripts Matlab
#457 Improved management of east longitudes in observation scripts arango defect major Matlab Processing Scripts Matlab
#458 Corrected few things in obs_depth.m arango bug major Matlab Processing Scripts Matlab
#459 KPP Nonlocal transport in passive tracers arango bug major Release ROMS/TOMS 3.4 Nonlinear
#460 Updated WC13/Normalization directory arango upgrade major Test Cases Test Cases
#461 Updated several matlab/4dvar scripts arango upgrade major Matlab Processing Scripts Matlab
#462 Corrected bug in standard deviation matlab scripts arango bug major Matlab Processing Scripts Matlab
#463 Added matlab scripts to process UK Met Office observations arango upgrade major Matlab Processing Scripts Matlab
#464 LAKE_SIGNELL update arango bug major Release ROMS/TOMS 3.4 Nonlinear
#465 Corrected a bug in load_ts_metoffice.m arango bug major Matlab Processing Scripts Matlab
#466 IMPORTANT: horizontal viscosity and MIX_GEO_UV arango bug major Release ROMS/TOMS 3.4 Nonlinear
#467 IMPORTANT, corrected a problem in mod_netcdf.F arango bug major Release ROMS/TOMS 3.4 Nonlinear
#468 IMPORTANT: Corrected parallel bug in uv3dmix4_geo.h and friends arango bug major Release ROMS/TOMS 3.4 Nonlinear
#469 IMPORTANT: Corrected parallel bug in ini_fields.F and friends arango bug major Release ROMS/TOMS 3.4 Nonlinear
#470 Corrected bug in obs_write.F when computing final misfit arango bug major Release ROMS/TOMS 3.4 Nonlinear
#471 Corrected typo in plotting package routine slevels.F arango bug major Plotting Package Plotting
#472 FLOAT_VWALK scaling problem arango bug major Release ROMS/TOMS 3.4 Nonlinear
#473 Corrected couple of bugs and typos arango bug major Release ROMS/TOMS 3.4 Nonlinear
#474 IMPORTANT: Corrected parallel bug in float's vertical random walk arango bug major Release ROMS/TOMS 3.4 Nonlinear
#475 Changed gasdev.F which is used to generate randim numbers arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#476 point source values replaced by FillValue arango defect major Release ROMS/TOMS 3.4 Nonlinear
#480 Refect (stick) floats that hit the surface (bottom) arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#481 Minimal Residual Method (MINRES) for R4D-Var and 4D-PSAS arango upgrade major Adjoint Based Algorithms Adjoint
#482 Spatially varying bottom friction parameters arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#483 Updated writing of water points, WRITE_WATER option arango bug major Release ROMS/TOMS 3.4 Nonlinear
#484 Corrected metadata for spatially varying bottom friction arango defect major Release ROMS/TOMS 3.4 Nonlinear
#485 Corrected reading of spatially varying bottom friction variables arango bug major Release ROMS/TOMS 3.4 Nonlinear
#486 Added new Courant number diagnostics to standard output arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#487 Add boundary call to scale_omega arango defect major Release ROMS/TOMS 3.4 Nonlinear
#488 Water points and the GST propagators arango bug major Release ROMS/TOMS 3.4 Nonlinear
#489 Suggestion for standard input files arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#490 Corrected adjoint time management logic in get_cycle.F arango bug major Adjoint Based Algorithms Adjoint
#492 Generalized Stability Theory Algorithms Revisited arango upgrade major Adjoint Based Algorithms Adjoint
#494 New vertical coordinates stretching function, Vstretching = 4 arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#495 Update ROMS vertical coodinates Matlab scripts arango upgrade major Matlab Processing Scripts Matlab
#496 Corrections vertical coordinates stretching function, Vstretching = 4 arango bug major Release ROMS/TOMS 3.4 Nonlinear
#497 IMPORTANT: ROMS build script revisited arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#498 IMPORTANT: Added test cases to the repository arango upgrade major Test Cases Test Cases
#499 Few updates arango upgrade major Release ROMS/TOMS 3.4 Nonlinear
#500 Corrected few typos arango defect major Release ROMS/TOMS 3.4 Nonlinear
#501 Missing PARPACK_LIBDIR in Test Cases build scripts arango defect major Test Cases Test Cases
#502 Tagged latest respository version as ROMS 3.4 arango release major Release ROMS/TOMS 3.5 Nonlinear
#503 WARNING: major overhaul of ROMS kernel to include nesting Phase I arango upgrade major Nesting/Composed Grids Nonlinear
#504 IMPORTANT: Updated Test Cases to ROMS 3.5 arango upgrade major Test Cases Test Cases
#505 Vorticity Calculation in vorticity.F arango bug major Release ROMS/TOMS 3.5 Nonlinear
#506 Updated biological models to include allocation of Ngrids depending parameters arango defect major Release ROMS/TOMS 3.5 Nonlinear
#507 Not all smooth with merge arango bug major Release ROMS/TOMS 3.5 Nonlinear
#509 Corrected initialization of Nfiles in inp_par.F arango bug major Release ROMS/TOMS 3.5 Nonlinear
#510 Unable to create new history NetCDF in restart mode (NRREC ≠ 0) arango bug major Release ROMS/TOMS 3.5 Nonlinear
#511 Time-averaged and diagnostic fields in the 4D-Var algorithms arango upgrade major Adjoint Based Algorithms Adjoint
#512 Corrected shared-memory bug in step3d_uv.F arango bug major Release ROMS/TOMS 3.5 Nonlinear
#513 Bug for TIDE(ng)%Vid arango bug major Release ROMS/TOMS 3.5 Nonlinear
#514 mpi exchange in ana_wwave arango bug major Release ROMS/TOMS 3.5 Nonlinear
#515 IMPORTANT: serious bug in step3d_uv.F arango bug major Release ROMS/TOMS 3.5 Nonlinear
#516 Miscelaneous updates arango upgrade major Release ROMS/TOMS 3.5 Nonlinear
#517 Increased dimension of information parameters arango upgrade major Release ROMS/TOMS 3.5 Nonlinear
#518 Tagged latest respository version as ROMS 3.5 arango release major Release ROMS/TOMS 3.6 Nonlinear
#519 WARNING: major overhaul of ROMS kernel to include nesting Phase II arango upgrade major Nesting/Composed Grids Release
#520 IMPORTANT: Updated Test Cases to ROMS 3.6 arango upgrade major Test Cases Release
#521 Checking lateral boundary condiditions during restart arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#522 Corrected stiffness.F for 2D applications arango bug major Release ROMS/TOMS 3.6 Nonlinear
#523 Uptated matlab/4dvar scripts arango upgrade major Matlab Processing Scripts Matlab
#525 Added error function (ERF) routines arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#526 Missing T_PASSIVE arango bug major Release ROMS/TOMS 3.6 Nonlinear
#527 Updated seagrid2roms matlab script arango upgrade major Matlab Processing Scripts Matlab
#528 Updated ROMS plotting pakage arango upgrade major Plotting Package Plotting
#529 Corrected a bug on convolve.F arango bug major Adjoint Based Algorithms Adjoint
#530 Various updates to ROMS plotting package arango upgrade major Plotting Package Plotting
#531 Updated Matlab processing scripts for NetCDF arango upgrade major Matlab Processing Scripts Matlab
#532 Updated Copyright 2002-2012 arango bug major Release ROMS/TOMS 3.6 Nonlinear
#533 Corrected typos in checkdefs arango defect major Release ROMS/TOMS 3.6 Nonlinear
#534 Added matlab scripts for grid refinement arango upgrade major Matlab Processing Scripts Matlab
#535 IMPORTANT: Added new Matlab scripts to process data for ROMS arango upgrade major Matlab Processing Scripts Matlab
#537 Corrected typo in ana_smflux arango bug major Release ROMS/TOMS 3.6 Nonlinear
#539 IMPORTANT: Added output of Eastward and Northward 2D/3D momentum components arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#540 Round-off problem in time-steping DO WHILE loop arango defect major Release ROMS/TOMS 3.6 Nonlinear
#541 Cyclic dependencies in the makefile arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#542 Corrected bug in wrt_his.F in 2D applications arango bug major Release ROMS/TOMS 3.6 Nonlinear
#543 Updated makefile and BIO_TOY input NetCDF files arango defect major Release ROMS/TOMS 3.6 Nonlinear
#544 Moved uv_rotate.F to ROMS/Utility arango defect major Release ROMS/TOMS 3.6 Nonlinear
#545 Corrected typos in ad_t3dbc_im.F and read_phypar.F arango bug major Release ROMS/TOMS 3.6 Nonlinear
#546 Corrected bug in inp_par.F arango bug major Release ROMS/TOMS 3.6 Nonlinear
#548 IMPORTANT: Corrected a bug in GST propagator (periodic applications) arango bug major Adjoint Based Algorithms Adjoint
#549 Corrected bug in zetabc.F arango bug major Release ROMS/TOMS 3.6 Nonlinear
#550 IMPORTANT: Updated TS_MPDATA, biology, sediment, difussion arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#551 IMPORTANT: Major overhault of scripts on the ROMS Matlab repository arango upgrade major Matlab Processing Scripts Matlab
#552 IMPORTANT: OpenMP shared-memory directives Revisited arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#553 Added biological behavior to Langrangian Drifters: Oyster Model arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#554 Added capability for partial lateral boundaries arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#555 Corrections due to F90/F95 strict compliance arango defect major Release ROMS/TOMS 3.6 Nonlinear
#556 falling off end of Cval in decode_line arango defect major Release ROMS/TOMS 3.6 Nonlinear
#557 Multi-file, multi-var issue on input arango bug major Release ROMS/TOMS 3.6 Nonlinear
#558 IMPORTANT: Ambigous local variable name in distribute.F arango bug major Release ROMS/TOMS 3.6 Nonlinear
#559 Corrected bug with the mass point sources, Q_PSOURCE arango bug major Release ROMS/TOMS 3.6 Nonlinear
#560 Bug in NEMURO, if HOLLING_GRAZING is activated arango bug major Release ROMS/TOMS 3.6 Nonlinear
#561 Updated several Matlab scripts arango upgrade major Matlab Processing Scripts Matlab
#562 Corrected several Matlab scripts arango bug major Matlab Processing Scripts Matlab
#563 Updated and corrected several Matlab scripts arango upgrade major Matlab Processing Scripts Matlab
#564 Continue working and updating the Matlab scripts. arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#565 IMPORTANT: Corrected and introduced new Matlab scripts arango upgrade major Matlab Processing Scripts Matlab
#566 MPI bug in momentum climatology nudging arango bug major Release ROMS/TOMS 3.6 Nonlinear
#567 LMD_MIXING and PERFECT_RESTART arango bug major Release ROMS/TOMS 3.6 Nonlinear
#568 warning in wrt_info arango bug major Release ROMS/TOMS 3.6 Nonlinear
#569 IMPORTANT: Active and Passive tracer and Limiting bottom stress arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#570 NTC parameter redeclared arango bug major Release ROMS/TOMS 3.6 Nonlinear
#571 set_data.F and friends arango request major Release ROMS/TOMS 3.6 Nonlinear
#572 Corrected CPP syntax arango bug major Adjoint Based Algorithms Adjoint
#573 Allocation of quadratic tracer indices arango bug major Release ROMS/TOMS 3.6 Nonlinear
#574 Modified grep syntax in build scripts arango defect major Release ROMS/TOMS 3.6 Nonlinear
#575 Added Hessian Drivers arango upgrade major Adjoint Based Algorithms Adjoint
#576 Updated Copyright 2002-2013 arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#577 Fixed copyright scripts for Mac OS arango defect major Release ROMS/TOMS 3.6 Nonlinear
#578 Updated data processing files arango defect major Release ROMS/TOMS 3.6 Nonlinear
#579 Corrected logic about tl_LBC arango bug major Adjoint Based Algorithms Nonlinear
#580 Metadata for all tracers climatology arango upgrade major Release ROMS/TOMS 3.6 Nonlinear
#581 Corrected bug in the adjoint of the NPZD models arango bug major Adjoint Based Algorithms Adjoint
#582 Corrected bug in inner2state arango bug major Adjoint Based Algorithms Nonlinear
#583 Tagged latest respository version as ROMS 3.6 arango release major Release ROMS/TOMS 3.6 Nonlinear
#584 WARNING: major overault of ROMS kernel to complete nesting Phase III arango release major Nesting/Composed Grids Nonlinear
#585 Updated input scripts arango upgrade major Test Cases Test Cases
#586 Updated several scripts in the ROMS Matlab repository arango upgrade major Matlab Processing Scripts Matlab
#587 Invalid use of optional argment in find_file function arango bug major Release ROMS/TOMS 3.7 Nonlinear
#588 bug in load_s2d arango bug major Release ROMS/TOMS 3.7 Nonlinear
#589 Fixed logic in editmask arango defect major Matlab Processing Scripts Matlab
#590 IMPORTANT: New lateral boundary conditions arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#591 IMPORTANT: Corrected index bug in new boundary conditions arango bug major Release ROMS/TOMS 3.7 Nonlinear
#592 IMPORTANT: index error in nesting.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#593 Corrected Matlab script contact.m arango bug major Matlab Processing Scripts Matlab
#594 Rewrote fine2coarse in the refinement algorithm arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#595 Updated extracting bathymetry Matlab scripts arango upgrade major Matlab Processing Scripts Nonlinear
#596 d_ecmwf2roms.m arango upgrade major Matlab Processing Scripts Matlab
#597 Miscellaneous updates arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#598 Reference to undefined netCDF constant arango bug major Matlab Processing Scripts Matlab
#599 Updated few Matlab scripts arango upgrade major Matlab Processing Scripts Matlab
#600 Corrected bug in inital.F when runing 4D-PSAS and friends arango bug major Adjoint Based Algorithms Adjoint
#601 Corrected bug in obs_sen_is4dvar.h arango bug major Adjoint Based Algorithms Adjoint
#602 Corrected few typos in several adjoint files arango bug major Adjoint Based Algorithms Adjoint
#603 Update Matlab scripts tp process 4D-Var observations arango upgrade major Matlab Processing Scripts Matlab
#604 IMPORTANT: Corrected bug in interp_boundary.m arango bug major Matlab Processing Scripts Matlab
#605 Corrected FLOATS restart arango bug major Release ROMS/TOMS 3.7 Nonlinear
#606 Added new color palettes for the plotting package arango upgrade major Plotting Package Plotting
#607 IMPORTANT: Corrected bug in t3dbc_im.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#609 Spatially varying Jerlov water type arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#610 IMPORTANT: Updated input multi-file capabities arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#611 Updated ROMS plotting package arango upgrade major Plotting Package Plotting
#612 Corrected potential density availability arango bug major Release ROMS/TOMS 3.7 Nonlinear
#613 IMPORTANT: Corrected miltifile option in parallel arango bug major Release ROMS/TOMS 3.7 Nonlinear
#614 IMPORTANT: Corrected nesting refinement algorithms arango bug major Release ROMS/TOMS 3.7 Nonlinear
#615 VERY IMPORTANT: Corrected Matlab scripts for grid nesting configuration arango defect major Matlab Processing Scripts Matlab
#616 VERY IMPORTANT: replaced UV_PSOURCE, Q_PSOURSE, and TS_PSOURCE with logical switches arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#617 VERY IMPORTANT: Corrected Matlab scripts for refinement arango defect major Release ROMS/TOMS 3.7 Nonlinear
#618 Time-averaged quadratic switches missing in biology and sediment input scripts arango defect major Release ROMS/TOMS 3.7 Nonlinear
#619 IMPORTANT: Updated nesting routines for refinement arango bug major Release ROMS/TOMS 3.7 Nonlinear
#620 IMPORTANT: Updated Matlab scripts for nesting arango upgrade major Matlab Processing Scripts Matlab
#621 Updated Copyright 2002-2014 arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#622 IMPORTANT: Updated reading LBC structure arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#623 Introducing LAKE_JERSEY test for Nesting. arango release major Nesting/Composed Grids Test Cases
#624 IMPORTANT: Few corrections arango bug major Release ROMS/TOMS 3.7 Nonlinear
#625 Updated matlab script contact.m arango defect major Matlab Processing Scripts Matlab
#626 Change to check_multifile prevents (or complicates) use of single-record forcing files arango bug major Release ROMS/TOMS 3.7 Nonlinear
#627 VERY IMPORTANT, Please READ: Overhaul of sponges, climatology, and nudging arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#628 Matlab scripts to process sponges and nudging inverse time scales arango release major Matlab Processing Scripts Matlab
#629 Corrected typo when reporting biology parameters arango bug major Release ROMS/TOMS 3.7 Nonlinear
#630 IMPORTANT: Corrected shared-memory bug arango bug major Release ROMS/TOMS 3.7 Nonlinear
#631 Corrected a bug in ana_nudgcoef.h arango bug major Release ROMS/TOMS 3.7 Nonlinear
#632 Corrected bug in ini_hmixcoef.F and improved check_multifile.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#633 IMPORTANT: Corrected bugs in the Shchepetkin boundary condition for 2D momentum arango bug major Release ROMS/TOMS 3.7 Nonlinear
#634 Corrected Matlab script d_ecmwf2roms.m arango bug major Matlab Processing Scripts Matlab
#635 Corrected coarse2fine.m and fine2coarse.m Matlab scripts arango defect major Matlab Processing Scripts Matlab
#636 IMPORTANT: Corrected bug in nesting.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#638 IMPORTANT: Changed the default values in contact.m arango upgrade major Matlab Processing Scripts Matlab
#639 Added processing of angle in matlab script coarse2fine.m arango defect major Matlab Processing Scripts Matlab
#640 Two typos in ini_hmixcoef.h arango bug major Release ROMS/TOMS 3.7 Nonlinear
#641 IMPORTANT: Updated Matlab scripts for nesting arango upgrade major Matlab Processing Scripts Matlab
#643 nesting du_avg1 call arango defect major Release ROMS/TOMS 3.7 Nonlinear
#646 IMPORTANT: Updated several Matlab scripts for nesting arango upgrade major Matlab Processing Scripts Matlab
#647 IMPORTANT: Updated nesting algorithms arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#648 IMPORTANT: Wetting and drying revisited arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#649 MPDATA tiling bug arango bug major Release ROMS/TOMS 3.7 Nonlinear
#650 Corrected bugs in inp_par.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#651 Corrected minor bug in mod_stepping.F arango bug major Release ROMS/TOMS 3.7 Adjoint
#652 VERY IMPORTANT: Updated Matlab nesting scripts arango upgrade major Matlab Processing Scripts Matlab
#653 VERY IMPORTANT: Corrected and Improved ROMS Nested Algorithms arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#654 Updated test Repository to include LAKE_JERSEY Examples arango upgrade major Test Cases Test Cases
#655 Corrected minor typo in v2dbc_im.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#656 Correct typos in several routines arango bug major Release ROMS/TOMS 3.7 Nonlinear
#657 Updated Copyright 2002-2015 arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#658 Corrected bug in mod_arrays.F arango bug major Adjoint Based Algorithms Adjoint
#659 Corrected bug in set_contact.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#661 Lake Jersey non-nested simulation: minor errors in input file arango bug major Release ROMS/TOMS 3.7 Nonlinear
#662 LMD_SHAPIRO problem arango defect major Release ROMS/TOMS 3.7 Nonlinear
#664 Bug in get_3dfldr.F arango bug major Release ROMS/TOMS 3.7 Adjoint
#665 Improvements to fennel.h arango bug major Release ROMS/TOMS 3.7 Nonlinear
#666 west sum for nesting not defined arango bug major Release ROMS/TOMS 3.7 Nonlinear
#667 modify def_his.F/wrt_his.F for writing wetdry_mask_psi arango bug major Release ROMS/TOMS 3.7 Nonlinear
#668 check_multifile picks wrong BRY and FRC file after restart arango bug major Release ROMS/TOMS 3.7 Nonlinear
#669 New option LIMIT_STFLX_COOLING arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#673 DOGBONE NetCDF contact files and the header file arango bug major Release ROMS/TOMS 3.7 Nonlinear
#674 New option AGE_MEAN for inert passive tracers arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#676 IMPORTANT: deallocation in nesting.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#678 IMPORTANT: Problem with multiple telescoping nested grids arango bug major Release ROMS/TOMS 3.7 Nonlinear
#679 IMPORTANT: correction to mod_grid.F in nesting applications arango bug major Release ROMS/TOMS 3.7 Nonlinear
#680 IMPORTANT: stations and floats in nesting applications arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#681 IMPORTANT: replacing option SPLINES arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#682 Profile Report arango defect major Release ROMS/TOMS 3.7 Nonlinear
#684 Bug in routine check_massflux arango bug major Release ROMS/TOMS 3.7 Nonlinear
#685 IMPORTANT: Corrected two-way nesting in layers with more than one grid arango defect major Release ROMS/TOMS 3.7 Nonlinear
#689 Important: Big update the Tracer Diffusion Algorithms arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#690 Important: Updated Tracer Point Sources and Sinks arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#691 Added deallocation of work array in distribute.F arango defect major Release ROMS/TOMS 3.7 Nonlinear
#692 Important: Corrected inert tracers (dye) output variable metadata arango bug major Release ROMS/TOMS 3.7 Nonlinear
#693 NEMURO model reporting the wrong parameter values arango defect major Release ROMS/TOMS 3.7 Nonlinear
#694 Added a Red Tide Ecosystem Model arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#695 Checking point source methodologies: invalid value of ng arango bug major Release ROMS/TOMS 3.7 Nonlinear
#696 Updated Copyright 2002-2016 arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#697 Important: 4D-Var or EnKF initial/restart file, ROMS depths, Observations arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#698 Corrected bug def_mod.F and def_var.F arango defect major Release ROMS/TOMS 3.7 Nonlinear
#699 NEED_VERSION needs to be extended for version 4.2 arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#700 Important: Changes to Bed Bottom Sediment Output Switches arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#701 SGRID conventions in ROMS output NetCDF files arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#702 IMPORTANT: Big update to 4D-Var Data Assimilation Algorithms arango upgrade major Adjoint Based Algorithms Adjoint
#703 Added standard_name to eastward/northward velocity components arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#704 New QUICKSAVE output NetCDF file arango request major Release ROMS/TOMS 3.7 Nonlinear
#705 DIAGNOSTICS_BIO vs. WET_DRY arango bug major Release ROMS/TOMS 3.7 Nonlinear
#706 Corrected bug in def_dai.F arango bug major Release ROMS/TOMS 3.7 Nonlinear
#707 Updated def_mod.F arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#708 Unallocated variable idefQCK in mod_ncparam.F and QUICKSAVE restart arango bug major Release ROMS/TOMS 3.7 Nonlinear
#709 NADJ paramerter and 4D-Var dual formulation arango upgrade major Adjoint Based Algorithms Adjoint
#710 Important: minor update to 4D-Var algorithms arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#711 Updated 4D-Var observation impact and sensitivity arango upgrade major Adjoint Based Algorithms Adjoint
#712 bug in WC13/PSAS build.bash, introduced at r822 (?) arango defect major Release ROMS/TOMS 3.7 Test Cases
#713 Important: corrected long_name attribute for obs_type arango defect major Matlab Processing Scripts Matlab
#714 Important: Updated output DAI NetCDF file arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#715 Error when reading vertically integrated mass transport. arango defect major Release ROMS/TOMS 3.7 Nonlinear
#716 Updated def_info.F and mod_scalars.F arango defect major Release ROMS/TOMS 3.7 Nonlinear
#717 Important: Error in correct_tracer routine for two-way nesting arango bug major Release ROMS/TOMS 3.7 Nonlinear
#718 Updated Copyright to 2002-2017 arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#719 Replaced NC_CONFIG and nc-config in buid and make configuration files arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#720 Correction to wpoints.F and the WRITE_WATER option with rivers arango bug major Release ROMS/TOMS 3.7 Nonlinear
#721 Bug in uv_rotate.F when not ASSUMED_SHAPE arango bug major Release ROMS/TOMS 3.7 Nonlinear
#722 IMPORTANT: Correction for the output observation NetCDF for DART arango bug major Release ROMS/TOMS 3.7 Nonlinear
#723 Misceleaneous corrections arango bug major Release ROMS/TOMS 3.7 Nonlinear
#724 Important: ROMS clock/date/calendar revisited arango upgrade major Release ROMS/TOMS 3.7 Nonlinear
#725 Error in structure syntax for Rclock arango bug major Release ROMS/TOMS 3.7 Nonlinear
#726 Fortran Integer Range arango defect major Release ROMS/TOMS 3.7 Nonlinear
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