| #4 |
Waves compilation problem
|
arango
|
defect
|
blocker
|
Release ROMS/TOMS 3.1
|
component1
|
| #27 |
change to mod_ncparam.F broke my ROMS_APPLICATION ?= WAKE case
|
arango
|
bug
|
critical
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #30 |
Memory Leak in the Lanczos Algorithm
|
arango
|
bug
|
critical
|
Adjoint Based Algorithms
|
Adjoint
|
| #96 |
Bug in inp_par.F for sediment runs with no cohesive sediment
|
arango
|
bug
|
critical
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #449 |
Floating point exceptions related to GLS_MIXING and PERFECT_RESTART
|
arango
|
bug
|
critical
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #671 |
A small bug in mod_boundary.F
|
arango
|
bug
|
critical
|
Adjoint Based Algorithms
|
Adjoint
|
| #1 |
Perfect Restart
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #3 |
typo in tl_zetabc.F
|
arango
|
defect
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #5 |
Maximum number of tidal constituents
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #6 |
Parallel bug in point data processing
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.1
|
Parallelism
|
| #7 |
Scrambled declarations in ad_forcing.F when ASSUMED_SHAPE active
|
arango
|
defect
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #9 |
A couple more declaration problems
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #11 |
Declaration problem in set_avg.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #12 |
And another 3 declaration problems
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #13 |
problem with inp_par.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Coupling
|
| #14 |
SWAN / ROMS coupling problem
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.1
|
Coupling
|
| #15 |
Make dependencies
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #16 |
Split get_data
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #17 |
Typo in set_data.F routines.
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #19 |
Errors in CPP logic in set_vbc.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #20 |
Application header file
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #21 |
Corrected few bugs
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #22 |
Allow non-standard location for Perl interpreter throughout
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #23 |
Miscellaneous fixes to Functionals files
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #25 |
Declaration problem in cgradient.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #26 |
ROMS fails to initialize in parallel with point sources/sink
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #28 |
Application ADRIA02 and river
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #29 |
Bugs in Master/mct_roms_wrf.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #31 |
ana_psource.h problem
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #32 |
Control application cpp flags from make command line
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #34 |
Problem in cgradient.F when not using LANCZOS
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #35 |
a bug in optobs_ocean.h
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #36 |
Hessian eigenvectors bug
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #38 |
Determining number of threads in OpenMP run
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #39 |
Number of Hessian eigenvectors
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #40 |
Occurences of MY_APPLICATION
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #42 |
Plotting user polylines in different colors
|
Arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #43 |
restart for sed morph
|
jcwarner
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Sediment
|
| #44 |
RitzEV
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #45 |
problem with link to "Hernan's handwritten notes" on ROMS web page
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Website
|
| #46 |
Allocation of Ritz variable
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #47 |
NetCDF F90 interface
|
arango
|
upgrade
|
major
|
Parallel Input/Output
|
Parallelism
|
| #48 |
ocean_avg.nc missing bottom stress
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #49 |
Compilation error when no ANA_* options defined
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #50 |
NetCDF f90 problems on Cray T3E
|
arango
|
bug
|
major
|
Parallel Input/Output
|
Parallelism
|
| #51 |
Closed/Gradient Conditions in bc_2d.F and bc_3d.F
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #54 |
typo in wrt_info.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #55 |
Suggestion for 30% faster compiles of forward model
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #57 |
Missing declaration of tl_srflx array
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #58 |
Native MPI libraries with PGI compiler
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Parallelism
|
| #59 |
q_psource
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #61 |
NEMURO model
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #65 |
makefile library access
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #66 |
4DVAR surface forcing minimization
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #67 |
Problem in allocation of t_west_C*
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #70 |
current version does not link to the ADM and TLM libraries when compiling
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #71 |
Variables t_east_C*
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #73 |
wpoint problem
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #74 |
TS_MPDATA, tl_Hz compiling problem
|
arango
|
defect
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #75 |
TS_MPDATA, Further leftovers?
|
arango
|
defect
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #76 |
TS_MPDATA, Missed declaration
|
arango
|
defect
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #77 |
TS_MPDATA, Missing function?
|
arango
|
defect
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #78 |
Typo in routine stats_modobs
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #79 |
Lower and upper bounds indices
|
arango
|
upgrade
|
major
|
Nesting/Composed Grids
|
Nonlinear
|
| #80 |
Typo in option ADJUST_WSTRESS
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #84 |
regrid wrong dimension
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #85 |
Several bugs in 4DVAR when adjusting surface fluxes
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #86 |
NEMURO model input file
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #88 |
4DVAR surface forcing corrections
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #89 |
Small adjoint bug and few typos
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #93 |
swan collection of final data
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #95 |
wvelocity
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #97 |
Nemuro model corrections
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #98 |
Zooplankton half-saturation ingestion constant
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #99 |
Parallel bug in mp_exchange4d, please update your code!
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #100 |
Parallel bug in SWAN
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Parallelism
|
| #104 |
combo of LMD and WET_DRY blows up
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #105 |
BKPP error on my part
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #106 |
Observation operator
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #107 |
def_rst patch for WET_DRY in 2d simulations
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #109 |
Fixes to 4DVAR surface fluxes estimation
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #110 |
4DVAR observation processing, shallow water model
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #111 |
Adjoint radiation boundary conditions
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #112 |
Parabolic splines vertical diffusion convolution, 4DVAR
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #113 |
Fasham model, oxygen sink by zooplakton
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #114 |
Adjoint bug in point sources
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #115 |
Detided time-averaged fields
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #116 |
Shortwave and longwave radiation parameterizations
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #118 |
Bug in 2D momentum reduced physics open boundary conditions
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #119 |
Added Copyright script
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #120 |
Potential problem during processing of 4DVAR observation
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #121 |
Few bugs in 4DVAR surface fluxes estimation
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #123 |
Inconsistent time_ref
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #126 |
Time-variable 4DVAR surface forcing adjustment
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #127 |
Screening for unphysical currents and density in diag.F
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #129 |
Few performance optimizations
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #133 |
Typo in inp_par.F stations output fields switch
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #134 |
Float restart (FRREC) does not work
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #135 |
Updated ROMS plotting package
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #137 |
Suppress output files if writing interval is zero
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #138 |
Updated all biology models
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #140 |
Updated several algorithms
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.1
|
Nonlinear
|
| #141 |
Tagged latest repository version as ROMS 3.1
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #142 |
Upgraded model to include nesting and ESMF drivers
|
arango
|
upgrade
|
major
|
Nesting/Composed Grids
|
Nonlinear
|
| #144 |
Updated model coupling using the MCT library
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #146 |
Updated SWAN model to version 40.51
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #149 |
Time dependent horizontal diffusion/viscosity coefficients
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #150 |
Corrected allocation of coupling structures Export and Import
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #154 |
spec2d SWAN ifort
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Coupling
|
| #155 |
maxrho/maxspeed bug for multiple serial tiles
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #157 |
bad old info in floats.in documentation
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #158 |
4DVAR Balance Operator
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #159 |
Typo in ana_m2obc Kelvin wave test
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #162 |
bulk_flux itermax
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #163 |
Small bug in the observation verification
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #164 |
Segmentation fault in tl_lmd_swfrac.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #166 |
Update internal ROMS NetCDF module
|
arango
|
upgrade
|
major
|
Parallel Input/Output
|
Parallelism
|
| #167 |
Observation sensitivity driver plus adjust forcing update
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #168 |
Few corrections to tickets 166 and 167
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #170 |
Couple of corrections and more updates
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #172 |
Several updates to surface forcing adjustment and exit_flag
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #175 |
Error while writing Hessian eigenvalues
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #176 |
using full compiler path
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #177 |
Type in gls_corstep.F and ana_srflux
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #178 |
tile bug in ini_fields
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #180 |
sediment.F restructuring
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #181 |
SWAN coupling mpi_finalize
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #182 |
Incorrect FORMAT statement number in def_floats.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #183 |
Corrections to read_FloatsPar in inp_par.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #184 |
Big IO update, parallel synchronization
|
arango
|
upgrade
|
major
|
Parallel Input/Output
|
Parallelism
|
| #185 |
IS4DVAR preconditioning
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #186 |
Missing h variable in ini_zeta routine arguments
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #187 |
bug in shapiro filter option for LMD_BKPP
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #188 |
Misplaced #endif in def_floats.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #189 |
Few corrections to big IO update
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #190 |
update estuary test
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #191 |
Table output for SWAN coupling
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #193 |
Private automatic arrays
|
arango
|
upgrade
|
major
|
Nesting/Composed Grids
|
Nonlinear
|
| #194 |
Couple of bugs in tl_def_his.F and tl_main2d.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #195 |
OpenMP undeclared variables
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #197 |
Observation Sensitivity bug
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #198 |
Initialization problem
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #199 |
Few corrections to the Observation Sensitivity driver
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #201 |
Spectral and Ritz 4DVAR preconditioning
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #202 |
Sediment-related bugs
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #206 |
Fixes to normalization.F and def_info.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #208 |
Corrected model/observations statistics
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #209 |
FLT_TEST 3D with MPI, out of bounds access in isobaric correction
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #210 |
ESTUARY_TEST sediment-related bugs
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #211 |
KELVIN test case blows up
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #213 |
Typo in formula for SST nudging/OI
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #215 |
Multiple Hessian files
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #216 |
Bugs in hmixing.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #217 |
Cray T3E with MPI: error writing to history file
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #219 |
Coefficients not initialised in step_floats.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #220 |
Term diagnostics time
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #221 |
NEMURO bug in large phytoplankton primary productivity
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #222 |
_FillValue for Land Masked in Output NetCDF
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #223 |
Problem with masked grid arrays in output NetCDF files
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #224 |
READ/WRITE_WATER problems
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #226 |
_FillValue logic in output NetCDF files
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #227 |
INLET_TEST failure due to src:ticket:214
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #228 |
Pointer association arguments to nf_fwrite*d routines
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #232 |
IS4VAR Revisited: Preconditioning
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #233 |
Removed is4dvar_ocean.h Driver
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #234 |
Pointer association in nf_fread*d routines
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #235 |
Memory leak when activating READ_WATER
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #236 |
Corrected 4DVAR observation operator
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #237 |
Missing arguments in wrt_hessian.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #238 |
Problem in input routines nf_fread*d when scale is not unity
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #240 |
Updated 4DVar observation operator
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #241 |
Updated 4DVar surface forcing adjustment
|
arango
|
defect
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #242 |
Updated weak constraint 4DVAR impulse forcing
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #245 |
Miscellaneous updates
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #246 |
Bug in representer model 2D boundary conditions
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #248 |
Updated output to NetCDF-4/HDF5 format file
|
arango
|
upgrade
|
major
|
Parallel Input/Output
|
Parallelism
|
| #249 |
Updated plotting package make configuration files
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #250 |
ANA_PASSIVE no longer working?
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #251 |
Surface fluxes adjustment in W4DVAR and W4DPSAS
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #252 |
Typo in inp_par.F for NEMURO model input pamereters
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #253 |
Wrong index in ana_nudgcoef.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #254 |
Preconditioning in weak-constraint data assimilation algorithms
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #256 |
Customized Biology/Ecosystem models
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #257 |
Parallel bug in ana_nudgcoef.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #258 |
W4DPSAS revisited
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #259 |
Corrected bug in wrt_impulse.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #260 |
Bug in tl_initial.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #261 |
Updated NetCDF IO gather/scatter
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #263 |
Big update due to IO parallelization and data assimilation
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #265 |
Few corrections to ticket src:ticket:263
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #268 |
3D U variables misaligned with INLINE_2DIO
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #269 |
Tidal forcing data not being read from forcing file
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #270 |
ROMS parallel I/O using the NetCDF-4/HDF5 libraries
|
arango
|
upgrade
|
major
|
Parallel Input/Output
|
Parallelism
|
| #271 |
Interpolation problem in regrid
|
arango
|
bug
|
major
|
Parallel Input/Output
|
Parallelism
|
| #272 |
Updated parallel I/O to support read/write of water points only
|
arango
|
upgrade
|
major
|
Parallel Input/Output
|
Parallelism
|
| #273 |
Allow or not processing of ghost points during reading/scattering
|
arango
|
defect
|
major
|
Parallel Input/Output
|
Parallelism
|
| #274 |
Avoid time checking on frequency variables
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #275 |
Corrected I/O bug when periodic conditions are activated
|
arango
|
bug
|
major
|
Parallel Input/Output
|
Parallelism
|
| #276 |
Corrected problem in Parallel I/O
|
arango
|
bug
|
major
|
Parallel Input/Output
|
Parallelism
|
| #277 |
Need to broadcast file names in parallel I/O
|
arango
|
bug
|
major
|
Parallel Input/Output
|
Parallelism
|
| #278 |
Corrected out-of-bound error in get_state.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #279 |
Corrected bug in the creation of the 4DVAR normalization file
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #280 |
Corrected parallel bug in white_noise.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #281 |
CF compliance
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #282 |
4DVAR adjustment of open boundaries
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #284 |
Use of boundary arrays
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #287 |
Updated EcoSim vertical sinking
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #288 |
Loaded wrong ad_set_depth.F file in ticket 285
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #289 |
Terrain-following vertical coordinate overhaul
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #291 |
Corrected bug in sed_settling.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #292 |
Round-off problems in netcdf_check_var
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #293 |
Missing declaration in mod_fourdvar.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #294 |
Released Matlab processing scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #295 |
Updated vertical coordinates computation in ROMS plotting package
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #296 |
Updated matlab/seawater toolbox
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #297 |
netcdf fill value for wetdry
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #298 |
Need to set critical depth (hc) for other transformations
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #301 |
Observation sensitivity for W4DPSAS and W4DVAR
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #302 |
Added scripts to process initial conditions
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #303 |
Surface atmospheric pressure forcing
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.2
|
Nonlinear
|
| #304 |
Another correction to the surface tracer 4DVAR adjustment
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #305 |
Tagged latest repository version as ROMS 3.2
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #306 |
Corrected typo in prsgrd31
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #307 |
Added missing day_code.m
|
arango
|
request
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #308 |
WET_DRY free-surface boundary data
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #309 |
Sediment bottom properties initial conditions logic
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #310 |
Misplaced CPP conditional in normalization.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #313 |
WET_DRY problem for Vstretching=2,3 in set_scoord.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #314 |
wet_dry v2dbc
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #315 |
Wrong CPP directive in congrad.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #316 |
Upated matlab scripts to compute ROMS vertical coorditnates
|
arango
|
defect
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #318 |
Updated 4DVAR adjustment of open boundaries
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #320 |
More corrections to the 4DVAR adjustment of open boundaries
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #322 |
Missing index in 4DVAR boundary adjustments
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #323 |
sediment restart
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #324 |
Corrected bugs in 4DVAR adjustment of open boundaries
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #325 |
4DVAR posterior error covariance matrix
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #327 |
Observation impact to the 4DVAR data assimilation systems
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #328 |
Added seagrid/presto and mex directories to Matlab scripts repositry
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #330 |
Ligth formulation in ROMS biology models
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #331 |
Corrected parallel bug in random_ic.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #332 |
Update to makefile, build and compilation scripts
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #333 |
Full 4DVAR posterior error convarinace diagonal matrix
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #334 |
Added new matlab processing scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #335 |
Corrected typo in npzd_iron.in
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #336 |
Corrected bug in 4DVAR multiple outer loops
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #337 |
backgound/foreground colors in black/white plotting programs
|
arango
|
request
|
major
|
Plotting Package
|
Plotting
|
| #338 |
Added new matlab scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #339 |
Incorrect logic in get_ngfld
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #340 |
Corrected bug in quadratic bottom stress for ice cavitiies
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #341 |
Corrections to adjoint of npzd_iron.h and npzd_Powell.h
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #342 |
4DVar Balance Operator
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #343 |
Tracer advection in adjoint-based algorithms
|
arango
|
request
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #344 |
Corrected release of Lagrangian drifters and parallel bug
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #345 |
Problem with NetCDF variables with more than 15 characters in plotting package
|
arango
|
defect
|
major
|
Plotting Package
|
Plotting
|
| #346 |
Corrected parallel bugs in ana_psource.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #349 |
4DVar unbalanced error covariance standard deviation scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #350 |
set_data: subscript out of range
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #351 |
Added missing CPP directives
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #352 |
Corrected bugs in Matlab script uv_balance.m
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #353 |
Failure from wrt_stations.F when LdefSTA is false.
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #354 |
Few corrections to balance operator
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #355 |
Corrected Matlab scripts used in balance operator
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #356 |
Added capability to process the add_offset attribute in input NetCDF files
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #358 |
Expanded use of add_offset and scale_factor
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #359 |
Corrected bug in nf_fread2d_bry and nf_fread3d_bry
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #360 |
New Biology and Sediment sub-directories
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #362 |
Corrected balance_4dvar.m script
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #363 |
Corrected a bug in get_cycle.F when processing timeless variables
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #364 |
Updated balance operator input parameters
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #365 |
Corrected several bug in the 4DVar algorithms
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #368 |
bulk fluxes and adjoint-based algorithms
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #370 |
Updated adjoint model impulse forcing and climatology mixing
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #371 |
Expanded NL_BULK_FLUXES to other algorithms
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #372 |
Call bulk_flux only in the first run of the nonlinear model
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #373 |
Level of no motion in 4DVar Balance Operator
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #374 |
WARNING: Corrected BUG in scale_factor attribute for input NetCDF files
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #375 |
Generalized coupled biology and sediment models interface
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #376 |
IMPORTANT: New parameters in input script files
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #377 |
make bug on cygwin
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #378 |
SOURCE(ng)%Ltracer and SOURCE(ng)%Lsrc
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #380 |
Operations on uninitialized data in NETCDF_GET_FVAR_1D
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #381 |
Corrected bug in ini_hmixcoef.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #382 |
Observation Impact, OBS_IMPACT_SPLIT
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #383 |
Miscelaneous bugs
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #384 |
Incorrectly coded option UV_PSOURCE in step2d_LF_AM3.h
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #385 |
Bug in def_rst.F for perfect restart in 2D configurations
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #386 |
Input parameters scripts and the KEYWORD
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #387 |
Corrected typo in observations impact variables
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #388 |
Generalized coupled biology and sediment models interface, final phase
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #389 |
Added observation impact capability for IS4DVAR
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #390 |
Added new output variables to ocean.in and stations.in
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #391 |
Override of DU_avg1 and DV_avg1 when using UV_PSOURCE
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #392 |
Cleaned repository and updated Copyright header
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #393 |
Corrected bug in sediment metadata
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #394 |
Renamed flag OBS_SENSITIVITY
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #395 |
Updated CYGWIN-ifort.mk
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.3
|
Nonlinear
|
| #396 |
Tagged latest repository version as ROMS 3.3
|
arango
|
release
|
major
|
Release ROMS/TOMS 3.4
|
Release
|
| #397 |
Added indices to plot term diagnostics
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #398 |
Updated Copyright for the matlab scripts repository
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #399 |
Corrected vertical integration in balance operator
|
arango
|
defect
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #400 |
Corrected typo in varinfo.dat (sand_north_ variable)
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #401 |
River runoff metadata typo in sediment_var.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #402 |
Input NetCDF files for BIO_TOY test case
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #403 |
Bug in ini_hmixcoef.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #404 |
Wrong angle in radiation_stress
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #405 |
Momentun and tracer equations diagnostic terms revisited
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #406 |
radiation_stress.F angle incorrecly adjusted !!!!!
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #407 |
Subscript of range for DiaU2rhs and DiaV2rhs
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #408 |
Corrected bug in get_ngfld.F and get_ngfldr.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #409 |
SWAN - MCT coupling memory bug
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #410 |
Missing metadata for river runoff and inert passive tracers
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #411 |
Removed obsolete option NUDGING_SSH
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #412 |
Corrected typo in inp_par.F for passive inert tracers
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #413 |
Corrected a problem when using get_state and netcdf_close
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #414 |
diagnostic bugs - several
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #416 |
Corrected an adjoint bug in NPZD_IRON
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #417 |
A small bug in obs_sen_is4dvar.h
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #418 |
Input NetCDF files from an OPeNDAP server
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #419 |
Logic with the 256 characters file names
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #420 |
Reverted change for NPZD_IRON
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #421 |
Averages and diagnostics output files revisited
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #422 |
Typo in Dout(iTvadv)
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #423 |
Missing module reference in ana_tobc.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #424 |
Tuned parallel I/O capabilities
|
arango
|
upgrade
|
major
|
Parallel Input/Output
|
Parallelism
|
| #425 |
Corrected typo in inp_par.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #426 |
small def_avg bug
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #427 |
Missing logic vertical viscosity diagnostics in inp_param.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #428 |
Stabilized Rpresenter Matrix Array Modes and Clipped Analysis
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #429 |
Missing END IF in def_avg.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #430 |
Updates several 4DVAR algorithms
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #431 |
Adding test directory to repository
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #432 |
Load 4D-Var test cases
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #433 |
Updated plotting scripts in 4D-Var tests
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #434 |
Added missing files in the 4D-Var test
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #435 |
Updated inp_par.F and added new job scripts
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #436 |
Corrected a bug in the PSAS 4D-Var algorithms
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #437 |
Updated documentation in 4D-Var test cases
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #438 |
Update ROMS plotting package
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #439 |
Update all Readme files in 4D-Var Test Cases
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #440 |
Declaration error in set_avg.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #441 |
Bug in plotting package, opencdf.F
|
arango
|
bug
|
major
|
Plotting Package
|
Plotting
|
| #442 |
Updated plotting package, hbackground.F
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #443 |
Important: updated matlab scripts repository
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #444 |
Updated 4D-Var test cases
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #445 |
Added scripts to compute 4D-Var error covariance standard deviation
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #446 |
Added scripts in the matlab/4dvar directory
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #447 |
More fine tuning of several matlab scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #448 |
Added global attribute "grid_Lm_Mm_N" to observation file
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #450 |
Bug in set_avg.F and typo on wrt_tides
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #451 |
Corrected typo in plot_super.m
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #452 |
Corrected bug in c_std_bry.m
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #453 |
Corrected a bug in the correlation and normalization driver
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #454 |
added driver d_std_obc.m
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #455 |
Corrected a bug in correlation.h
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #456 |
Added obs_depth.m
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #457 |
Improved management of east longitudes in observation scripts
|
arango
|
defect
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #458 |
Corrected few things in obs_depth.m
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #459 |
KPP Nonlocal transport in passive tracers
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #460 |
Updated WC13/Normalization directory
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #461 |
Updated several matlab/4dvar scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #462 |
Corrected bug in standard deviation matlab scripts
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #463 |
Added matlab scripts to process UK Met Office observations
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #464 |
LAKE_SIGNELL update
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #465 |
Corrected a bug in load_ts_metoffice.m
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #466 |
IMPORTANT: horizontal viscosity and MIX_GEO_UV
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #467 |
IMPORTANT, corrected a problem in mod_netcdf.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #468 |
IMPORTANT: Corrected parallel bug in uv3dmix4_geo.h and friends
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #469 |
IMPORTANT: Corrected parallel bug in ini_fields.F and friends
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #470 |
Corrected bug in obs_write.F when computing final misfit
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #471 |
Corrected typo in plotting package routine slevels.F
|
arango
|
bug
|
major
|
Plotting Package
|
Plotting
|
| #472 |
FLOAT_VWALK scaling problem
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #473 |
Corrected couple of bugs and typos
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #474 |
IMPORTANT: Corrected parallel bug in float's vertical random walk
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #475 |
Changed gasdev.F which is used to generate randim numbers
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #476 |
point source values replaced by FillValue
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #480 |
Refect (stick) floats that hit the surface (bottom)
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #481 |
Minimal Residual Method (MINRES) for R4D-Var and 4D-PSAS
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #482 |
Spatially varying bottom friction parameters
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #483 |
Updated writing of water points, WRITE_WATER option
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #484 |
Corrected metadata for spatially varying bottom friction
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #485 |
Corrected reading of spatially varying bottom friction variables
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #486 |
Added new Courant number diagnostics to standard output
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #487 |
Add boundary call to scale_omega
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #488 |
Water points and the GST propagators
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #489 |
Suggestion for standard input files
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #490 |
Corrected adjoint time management logic in get_cycle.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #492 |
Generalized Stability Theory Algorithms Revisited
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #494 |
New vertical coordinates stretching function, Vstretching = 4
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #495 |
Update ROMS vertical coodinates Matlab scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #496 |
Corrections vertical coordinates stretching function, Vstretching = 4
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #497 |
IMPORTANT: ROMS build script revisited
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #498 |
IMPORTANT: Added test cases to the repository
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #499 |
Few updates
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #500 |
Corrected few typos
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.4
|
Nonlinear
|
| #501 |
Missing PARPACK_LIBDIR in Test Cases build scripts
|
arango
|
defect
|
major
|
Test Cases
|
Test Cases
|
| #502 |
Tagged latest respository version as ROMS 3.4
|
arango
|
release
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #503 |
WARNING: major overhaul of ROMS kernel to include nesting Phase I
|
arango
|
upgrade
|
major
|
Nesting/Composed Grids
|
Nonlinear
|
| #504 |
IMPORTANT: Updated Test Cases to ROMS 3.5
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #505 |
Vorticity Calculation in vorticity.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #506 |
Updated biological models to include allocation of Ngrids depending parameters
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #507 |
Not all smooth with merge
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #509 |
Corrected initialization of Nfiles in inp_par.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #510 |
Unable to create new history NetCDF in restart mode (NRREC ≠ 0)
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #511 |
Time-averaged and diagnostic fields in the 4D-Var algorithms
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #512 |
Corrected shared-memory bug in step3d_uv.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #513 |
Bug for TIDE(ng)%Vid
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #514 |
mpi exchange in ana_wwave
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #515 |
IMPORTANT: serious bug in step3d_uv.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #516 |
Miscelaneous updates
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #517 |
Increased dimension of information parameters
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.5
|
Nonlinear
|
| #518 |
Tagged latest respository version as ROMS 3.5
|
arango
|
release
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #519 |
WARNING: major overhaul of ROMS kernel to include nesting Phase II
|
arango
|
upgrade
|
major
|
Nesting/Composed Grids
|
Release
|
| #520 |
IMPORTANT: Updated Test Cases to ROMS 3.6
|
arango
|
upgrade
|
major
|
Test Cases
|
Release
|
| #521 |
Checking lateral boundary condiditions during restart
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #522 |
Corrected stiffness.F for 2D applications
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #523 |
Uptated matlab/4dvar scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #525 |
Added error function (ERF) routines
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #526 |
Missing T_PASSIVE
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #527 |
Updated seagrid2roms matlab script
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #528 |
Updated ROMS plotting pakage
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #529 |
Corrected a bug on convolve.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #530 |
Various updates to ROMS plotting package
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #531 |
Updated Matlab processing scripts for NetCDF
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #532 |
Updated Copyright 2002-2012
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #533 |
Corrected typos in checkdefs
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #534 |
Added matlab scripts for grid refinement
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #535 |
IMPORTANT: Added new Matlab scripts to process data for ROMS
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #537 |
Corrected typo in ana_smflux
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #539 |
IMPORTANT: Added output of Eastward and Northward 2D/3D momentum components
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #540 |
Round-off problem in time-steping DO WHILE loop
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #541 |
Cyclic dependencies in the makefile
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #542 |
Corrected bug in wrt_his.F in 2D applications
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #543 |
Updated makefile and BIO_TOY input NetCDF files
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #544 |
Moved uv_rotate.F to ROMS/Utility
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #545 |
Corrected typos in ad_t3dbc_im.F and read_phypar.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #546 |
Corrected bug in inp_par.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #548 |
IMPORTANT: Corrected a bug in GST propagator (periodic applications)
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #549 |
Corrected bug in zetabc.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #550 |
IMPORTANT: Updated TS_MPDATA, biology, sediment, difussion
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #551 |
IMPORTANT: Major overhault of scripts on the ROMS Matlab repository
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #552 |
IMPORTANT: OpenMP shared-memory directives Revisited
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #553 |
Added biological behavior to Langrangian Drifters: Oyster Model
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #554 |
Added capability for partial lateral boundaries
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #555 |
Corrections due to F90/F95 strict compliance
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #556 |
falling off end of Cval in decode_line
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #557 |
Multi-file, multi-var issue on input
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #558 |
IMPORTANT: Ambigous local variable name in distribute.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #559 |
Corrected bug with the mass point sources, Q_PSOURCE
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #560 |
Bug in NEMURO, if HOLLING_GRAZING is activated
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #561 |
Updated several Matlab scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #562 |
Corrected several Matlab scripts
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #563 |
Updated and corrected several Matlab scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #564 |
Continue working and updating the Matlab scripts.
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #565 |
IMPORTANT: Corrected and introduced new Matlab scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #566 |
MPI bug in momentum climatology nudging
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #567 |
LMD_MIXING and PERFECT_RESTART
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #568 |
warning in wrt_info
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #569 |
IMPORTANT: Active and Passive tracer and Limiting bottom stress
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #570 |
NTC parameter redeclared
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #571 |
set_data.F and friends
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #572 |
Corrected CPP syntax
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #573 |
Allocation of quadratic tracer indices
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #574 |
Modified grep syntax in build scripts
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #575 |
Added Hessian Drivers
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #576 |
Updated Copyright 2002-2013
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #577 |
Fixed copyright scripts for Mac OS
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #578 |
Updated data processing files
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #579 |
Corrected logic about tl_LBC
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Nonlinear
|
| #580 |
Metadata for all tracers climatology
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #581 |
Corrected bug in the adjoint of the NPZD models
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #582 |
Corrected bug in inner2state
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Nonlinear
|
| #583 |
Tagged latest respository version as ROMS 3.6
|
arango
|
release
|
major
|
Release ROMS/TOMS 3.6
|
Nonlinear
|
| #584 |
WARNING: major overault of ROMS kernel to complete nesting Phase III
|
arango
|
release
|
major
|
Nesting/Composed Grids
|
Nonlinear
|
| #585 |
Updated input scripts
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #586 |
Updated several scripts in the ROMS Matlab repository
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #587 |
Invalid use of optional argment in find_file function
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #588 |
bug in load_s2d
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #589 |
Fixed logic in editmask
|
arango
|
defect
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #590 |
IMPORTANT: New lateral boundary conditions
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #591 |
IMPORTANT: Corrected index bug in new boundary conditions
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #592 |
IMPORTANT: index error in nesting.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #593 |
Corrected Matlab script contact.m
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #594 |
Rewrote fine2coarse in the refinement algorithm
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #595 |
Updated extracting bathymetry Matlab scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Nonlinear
|
| #596 |
d_ecmwf2roms.m
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #597 |
Miscellaneous updates
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #598 |
Reference to undefined netCDF constant
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #599 |
Updated few Matlab scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #600 |
Corrected bug in inital.F when runing 4D-PSAS and friends
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #601 |
Corrected bug in obs_sen_is4dvar.h
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #602 |
Corrected few typos in several adjoint files
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #603 |
Update Matlab scripts tp process 4D-Var observations
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #604 |
IMPORTANT: Corrected bug in interp_boundary.m
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #605 |
Corrected FLOATS restart
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #606 |
Added new color palettes for the plotting package
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #607 |
IMPORTANT: Corrected bug in t3dbc_im.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #609 |
Spatially varying Jerlov water type
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #610 |
IMPORTANT: Updated input multi-file capabities
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #611 |
Updated ROMS plotting package
|
arango
|
upgrade
|
major
|
Plotting Package
|
Plotting
|
| #612 |
Corrected potential density availability
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #613 |
IMPORTANT: Corrected miltifile option in parallel
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #614 |
IMPORTANT: Corrected nesting refinement algorithms
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #615 |
VERY IMPORTANT: Corrected Matlab scripts for grid nesting configuration
|
arango
|
defect
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #616 |
VERY IMPORTANT: replaced UV_PSOURCE, Q_PSOURSE, and TS_PSOURCE with logical switches
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #617 |
VERY IMPORTANT: Corrected Matlab scripts for refinement
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #618 |
Time-averaged quadratic switches missing in biology and sediment input scripts
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #619 |
IMPORTANT: Updated nesting routines for refinement
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #620 |
IMPORTANT: Updated Matlab scripts for nesting
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #621 |
Updated Copyright 2002-2014
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #622 |
IMPORTANT: Updated reading LBC structure
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #623 |
Introducing LAKE_JERSEY test for Nesting.
|
arango
|
release
|
major
|
Nesting/Composed Grids
|
Test Cases
|
| #624 |
IMPORTANT: Few corrections
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #625 |
Updated matlab script contact.m
|
arango
|
defect
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #626 |
Change to check_multifile prevents (or complicates) use of single-record forcing files
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #627 |
VERY IMPORTANT, Please READ: Overhaul of sponges, climatology, and nudging
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #628 |
Matlab scripts to process sponges and nudging inverse time scales
|
arango
|
release
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #629 |
Corrected typo when reporting biology parameters
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #630 |
IMPORTANT: Corrected shared-memory bug
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #631 |
Corrected a bug in ana_nudgcoef.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #632 |
Corrected bug in ini_hmixcoef.F and improved check_multifile.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #633 |
IMPORTANT: Corrected bugs in the Shchepetkin boundary condition for 2D momentum
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #634 |
Corrected Matlab script d_ecmwf2roms.m
|
arango
|
bug
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #635 |
Corrected coarse2fine.m and fine2coarse.m Matlab scripts
|
arango
|
defect
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #636 |
IMPORTANT: Corrected bug in nesting.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #638 |
IMPORTANT: Changed the default values in contact.m
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #639 |
Added processing of angle in matlab script coarse2fine.m
|
arango
|
defect
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #640 |
Two typos in ini_hmixcoef.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #641 |
IMPORTANT: Updated Matlab scripts for nesting
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #643 |
nesting du_avg1 call
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #646 |
IMPORTANT: Updated several Matlab scripts for nesting
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #647 |
IMPORTANT: Updated nesting algorithms
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #648 |
IMPORTANT: Wetting and drying revisited
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #649 |
MPDATA tiling bug
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #650 |
Corrected bugs in inp_par.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #651 |
Corrected minor bug in mod_stepping.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Adjoint
|
| #652 |
VERY IMPORTANT: Updated Matlab nesting scripts
|
arango
|
upgrade
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #653 |
VERY IMPORTANT: Corrected and Improved ROMS Nested Algorithms
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #654 |
Updated test Repository to include LAKE_JERSEY Examples
|
arango
|
upgrade
|
major
|
Test Cases
|
Test Cases
|
| #655 |
Corrected minor typo in v2dbc_im.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #656 |
Correct typos in several routines
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #657 |
Updated Copyright 2002-2015
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #658 |
Corrected bug in mod_arrays.F
|
arango
|
bug
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #659 |
Corrected bug in set_contact.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #661 |
Lake Jersey non-nested simulation: minor errors in input file
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #662 |
LMD_SHAPIRO problem
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #664 |
Bug in get_3dfldr.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Adjoint
|
| #665 |
Improvements to fennel.h
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #666 |
west sum for nesting not defined
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #667 |
modify def_his.F/wrt_his.F for writing wetdry_mask_psi
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #668 |
check_multifile picks wrong BRY and FRC file after restart
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #669 |
New option LIMIT_STFLX_COOLING
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #673 |
DOGBONE NetCDF contact files and the header file
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #674 |
New option AGE_MEAN for inert passive tracers
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #676 |
IMPORTANT: deallocation in nesting.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #678 |
IMPORTANT: Problem with multiple telescoping nested grids
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #679 |
IMPORTANT: correction to mod_grid.F in nesting applications
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #680 |
IMPORTANT: stations and floats in nesting applications
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #681 |
IMPORTANT: replacing option SPLINES
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #682 |
Profile Report
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #684 |
Bug in routine check_massflux
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #685 |
IMPORTANT: Corrected two-way nesting in layers with more than one grid
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #689 |
Important: Big update the Tracer Diffusion Algorithms
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #690 |
Important: Updated Tracer Point Sources and Sinks
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #691 |
Added deallocation of work array in distribute.F
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #692 |
Important: Corrected inert tracers (dye) output variable metadata
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #693 |
NEMURO model reporting the wrong parameter values
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #694 |
Added a Red Tide Ecosystem Model
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #695 |
Checking point source methodologies: invalid value of ng
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #696 |
Updated Copyright 2002-2016
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #697 |
Important: 4D-Var or EnKF initial/restart file, ROMS depths, Observations
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #698 |
Corrected bug def_mod.F and def_var.F
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #699 |
NEED_VERSION needs to be extended for version 4.2
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #700 |
Important: Changes to Bed Bottom Sediment Output Switches
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #701 |
SGRID conventions in ROMS output NetCDF files
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #702 |
IMPORTANT: Big update to 4D-Var Data Assimilation Algorithms
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #703 |
Added standard_name to eastward/northward velocity components
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #704 |
New QUICKSAVE output NetCDF file
|
arango
|
request
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #705 |
DIAGNOSTICS_BIO vs. WET_DRY
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #706 |
Corrected bug in def_dai.F
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #707 |
Updated def_mod.F
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #708 |
Unallocated variable idefQCK in mod_ncparam.F and QUICKSAVE restart
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #709 |
NADJ paramerter and 4D-Var dual formulation
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #710 |
Important: minor update to 4D-Var algorithms
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #711 |
Updated 4D-Var observation impact and sensitivity
|
arango
|
upgrade
|
major
|
Adjoint Based Algorithms
|
Adjoint
|
| #712 |
bug in WC13/PSAS build.bash, introduced at r822 (?)
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Test Cases
|
| #713 |
Important: corrected long_name attribute for obs_type
|
arango
|
defect
|
major
|
Matlab Processing Scripts
|
Matlab
|
| #714 |
Important: Updated output DAI NetCDF file
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #715 |
Error when reading vertically integrated mass transport.
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #716 |
Updated def_info.F and mod_scalars.F
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #717 |
Important: Error in correct_tracer routine for two-way nesting
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #718 |
Updated Copyright to 2002-2017
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #719 |
Replaced NC_CONFIG and nc-config in buid and make configuration files
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #720 |
Correction to wpoints.F and the WRITE_WATER option with rivers
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #721 |
Bug in uv_rotate.F when not ASSUMED_SHAPE
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #722 |
IMPORTANT: Correction for the output observation NetCDF for DART
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #723 |
Misceleaneous corrections
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #724 |
Important: ROMS clock/date/calendar revisited
|
arango
|
upgrade
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #725 |
Error in structure syntax for Rclock
|
arango
|
bug
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
| #726 |
Fortran Integer Range
|
arango
|
defect
|
major
|
Release ROMS/TOMS 3.7
|
Nonlinear
|
