Model Coupling IRENE

Test Case: Hurricane Irene

Warning: This is quite a complex test using several advanced features of ROMS. It is intended for expert ROMS users. If you are a ROMS beginner, we highly recommend staying away from this test case until you gain substantial expertise with simpler test cases and applications.

Introduction

Hurricane Irene is used for testing ROMS coupling infra-structure with the ESMF/NUOPC library. It includes examples for running atmosphere-ocean coupling, weakly coupled atmosphere-ocean data assimilation with 4D-Var only in the ROMS component, and forward solution with observations verification. Hurricane Irene was the first major hurricane of the 2011 Atlantic hurricane season, as shown below.

The coupled DATA-WRF-ROMS system runs for only 42 hours as Hurricane Irene approaches the U.S. East Coast. The simulations are stated on 2011-08-27 06:00:00 GMT. The WRF and ROMS grids are incongruent, as shown below, so the DATA model provides the SST values to WRF at locations not covered by the ROMS grid. In this case, SST is exported from ROMS and DATA components to WRF, which imports the regridded values and then melds both SST fields. The DATA component is usually a NetCDF file containing SST data snapshots from satellite, climatology, or a global model forecast/hindcast like HyCOM.

Grid Setup and Melding

The WRF 6km resolution grid occupies a larger area than the ROMS ~7 km resolution domain. The DATA component consists of a NetCDF containing 3-hour SST snapshots extracted from the HyCOM GLBu0.08 hindcast dataset. The NUOPC cap file for WRF melds the imported, regridded SST using the following equation:

$${\hbox{SST}}_{\hbox{ATM}}(:,:)=W_{\hbox{ROMS}}(:,:)*{\hbox{SST}}_{\hbox{ROMS}}(:,:)+W_{\hbox{DATA}}(:,:)*{\hbox{SST}}_{\hbox{DATA}}(:,:)$$

where $W_{\hbox{ROMS}}(:,:)+W_{\hbox{DATA}}(:,:)=1.0$ are the weight coefficients that guarantee a smooth transition between the ROMS and DATA values, as illustrated below.

These weights are computed and plotted using the script coupling/wrf_weights.m from the ROMS Matlab repository.

ROMS Driver

The design of the ROMS coupling interface with the ESMF/NUOPC library allows both driver and component modes of operation. This test case uses the driver mode, meaning that ROMS is the main program that provides all the interfaces and logistics to couple to other ESM components. In addition, it provides NUOPC-based generic ESM component services, interaction between gridded components in terms of NUOPC cap files, connectors between components for the regridding of source and destination fields (esmf_coupler.h), input scripts, and coupling metadata management.

For more details about driver and component modes, check the ESMF wiki page.

Run Sequence

The ESMF RunSequence configuration file sets how the ESM components are connected and coupled. All the components interact with the same or different coupling time step. Usually, the connector from ROMS to ATM is explicit, whereas the connector from ATM to ROMS is semi-implicit. Often, the timestep of the atmosphere kernel is smaller than that for the ocean. Therefore, it is advantageous for the ATM model to export time-averaged fields over the coupling interval, which is the same as the ROMS timestep. It is semi-implicit because ROMS right-hand-side terms are forced with n+1/2 ATM fields because of the time-averaging. In this application, the WRF and ROMS timesteps are 20 and 60 seconds, respectively, for stable solutions due to the strong hurricane winds. The coupling step is 60 seconds (same as ROMS). The WRF values are averaged every 60 seconds by activating its RAMS averaged diagnostics package. The following diagram shows the explicit and semi-implicit coupling for a DATA-WRF-ROMS system:

Semi-Implicit, ATM Average

# Hurricane Irene Application (single time loop) runSeq:: @* # timeStep = wildcard (*) DATA -> WRF # DATA to WRF connector DATA ROMS -> WRF # ROMS to WRF connector WRF WRF -> ROMS # WRF to ROMS connector ROMS @ ::

Downloading and Compiling WRF

• To download WRF and WPS version 4.3, you may use:
  > git clone https://github.com/wrf-model/WRF WRF.4.3
  > cd WRF.4.3
  > git checkout tags/v4.3
  
  > git clone https://github.com/wrf-model/WPS WPS.4.3
  > cd WPS.4.3
  > git checkout tags/v4.3

• Configure the build_wrf.csh (or build_wrf.sh) script:
  • set the ROMS_SRC_DIR to the location of you ROMS source code and WRF_ROOT_DIR to location of your WRF source code.
  • Make sure which_MPI and FORT are set appropriately.

• We want to have the compiled WRF objects outside the WRF source code directory to make incorporating WRF into the coupled system easier. To do this, we use the build_wrf.csh (or build_wrf.sh) -move option. For example:
  > build_wrf.csh -j 10 -move
  • Choose the appropriate "(dmpar)" option for your compiler. For Example, we choose 15 from the list below to compile with the Intel compilers:
    1. (serial) 2. (smpar) 3. (dmpar) 4. (dm+sm) PGI (pgf90/gcc)
    5. (serial) 6. (smpar) 7. (dmpar) 8. (dm+sm) PGI (pgf90/pgcc): SGI MPT
    9. (serial) 10. (smpar) 11. (dmpar) 12. (dm+sm) PGI (pgf90/gcc): PGI accelerator
    13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc)
    17. (dm+sm) INTEL (ifort/icc): Xeon Phi
    18. (serial) 19. (smpar) 20. (dmpar) 21. (dm+sm) INTEL (ifort/icc): Xeon (SNB with AVX mods)
    22. (serial) 23. (smpar) 24. (dmpar) 25. (dm+sm) INTEL (ifort/icc): SGI MPT
    26. (serial) 27. (smpar) 28. (dmpar) 29. (dm+sm) INTEL (ifort/icc): IBM POE
    30. (serial) 31. (dmpar) PATHSCALE (pathf90/pathcc)
    32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc)
    36. (serial) 37. (smpar) 38. (dmpar) 39. (dm+sm) IBM (xlf90_r/cc_r)
    40. (serial) 41. (smpar) 42. (dmpar) 43. (dm+sm) PGI (ftn/gcc): Cray XC CLE
    44. (serial) 45. (smpar) 46. (dmpar) 47. (dm+sm) CRAY CCE (ftn $(NOOMP)/cc): Cray XE and XC
    48. (serial) 49. (smpar) 50. (dmpar) 51. (dm+sm) INTEL (ftn/icc): Cray XC
    52. (serial) 53. (smpar) 54. (dmpar) 55. (dm+sm) PGI (pgf90/pgcc)
    56. (serial) 57. (smpar) 58. (dmpar) 59. (dm+sm) PGI (pgf90/gcc): -f90=pgf90
    60. (serial) 61. (smpar) 62. (dmpar) 63. (dm+sm) PGI (pgf90/pgcc): -f90=pgf90
    64. (serial) 65. (smpar) 66. (dmpar) 67. (dm+sm) INTEL (ifort/icc): HSW/BDW
    68. (serial) 69. (smpar) 70. (dmpar) 71. (dm+sm) INTEL (ifort/icc): KNL MIC
    Note: If you are using Intel MPI, be sure to set which_MPI to intel in your WRF build script. Otherwise, the WRF build system will use the wrong MPI compiler.

• When asked "Compile for nesting?" you will probably want to choose 1 for basic.

• It the build is successful, the WRF executables will be located in the Build_wrf/Bin directory.

Note: It is useful to define an "ltl" alias in your login script (.cshrc or .bashrc) to avoid showing all the links to data files created by the build script and needed to run WRF.

BASH:

alias ltl='/bin/ls -ltHF | grep -v ^l'

CSH/TCSH:

alias ltl '/bin/ls -ltHF | grep -v ^l'

Configuring and Compiling ROMS

ROMS is the driver of the coupling system. In this application the WRF surface Boundary Layer (SBL) formulation is used to compute the atmospheric fluxes. Therefore, bulk_flux = 0 in either build_roms.csh or build_roms.sh.

Notice that bulk_flux = 1 activates ROMS CPP options: BULK_FLUXES, COOL_SKIN, WIND_MINUS_CURRENT, EMINUSP, and LONGWAVE_OUT. The option bulk_flux = 1 in the ROMS build script IS NOT RECOMMENDED FOR THIS APPLICATION because the bulk_flux.F module is not tuned for Hurricane regimes, and will get the wrong solution.

Note: The following important CPP options are activated in build_roms.csh or build_roms.sh:

IRENE ROMS application CPP option
DATA_COUPLING Activates DATA component
ESMF_LIB ESMF/NUOPC coupling library (version 8.0 and up)
FRC_COUPLING Activates surface forcing from coupled system
ROMS_STDOUT ROMS standard output is written into 'log.roms'
VERIFICATION Interpolates ROMS solution at observation points
WRF_COUPLING Activates WRF component (version 4.1 and up)
WRF_TIMEAVG WRF exporting 60 sec time-averaged fields

• Correctly set MY_ROMS_SRC, COMPILERS (if necessary), which_MPI, and FORT in build_roms.csh or build_roms.sh.

• Compile ROMS with:
  > build_roms.csh -j 10

• Customize submit.sh for use on your system.
  • If your system uses a scheduler like SLURM:
    > sbatch submit.sh
  • If your system does not have a scheduler and your shell is BASH:
    > submit.sh > log 2>&1 &
  • If your system does not have a scheduler and your shell is CSH/TCSH:
    > submit.sh > & log &

Output Files

• Standard output files:
  log.coupler coupler information
  log.esmf ESMF/NUOPC informatiom
  log.roms ROMS standard output
  log.wrf WRF standard error/output
  namelist.output WRF configuration parameters

• ROMS NetCDF files:
  irene_avg.nc 6-hour averages
  irene_his.nc hourly history
  irene_mod_20110827.nc model at observation locations
  irene_qck.nc hourly surface fields quick save
  irene_rst.nc restart

• WRF NetCDF files:
  irene_wrf_his_d01_2011-08-27_06_00_00.nc hourly history

Results