Variables

H

Hz

Vertical level thicknesses, $\,H_{z}\,(\xi ,\eta ,s)$.

dimension = Hz(LBi:UBi,LBj:UBj,N(ng))

pointer = GRID(ng)%Hz

tangent = tl_Hz

adjoint = ad_Hz

units = meter

grid = ρ-points

CPP = SOLVE3D

routine = set_depths.F

I

idbio

Identification indeces for biological tracer variables, t(:,:,:,:,idbio(:)).

dimension = inert(NBT

CPP = BIOLOGY

routine = mod_scalars.F

idsed

Identification indeces for biological tracer variables, t(:,:,:,:,idsed(:)).

dimension = inert(NST

CPP = SEDIMENT

routine = mod_scalars.F

inert

Identification indeces for inert tracer variables, t(:,:,:,:,inert(:)).

CPP = T_PASSIVE

routine = mod_scalars.F

itemp

Tracer identification index for potential temperature, t(:,:,:,:,itemp).

routine = mod_scalars.F

isalt

Tracer identification index for salinity, t(:,:,:,:,isalt).

routine = mod_scalars.F

L

LBi

Array lower bound dimension in the i-direction.

LBj

Array lower bound dimension in the j-direction.

N

N

Number of vertical levels for each nested grid.

dimension = N(Ngrids)

routine = mod_param.F

Ngrids

Number of nested and/or multiple connected grids to solve.

routine = mod_param.F

NAT

Number of active tracer-type variables. Usually, it has a value of two for potential temperature and salinty.

CPP = SOLVE3D

routine = mod_param.F

NBT

Number of biological tracer-type variables.

CPP = BIOLOGY

routine = mod_param.F

NCS

Number of cohesive (mud) sediment tracer-type variables.

CPP = SEDIMENT

routine = mod_param.F

NNS

Number of non-cohesive (sand) sediment tracer-type variables.

CPP = SEDIMENT

routine = mod_param.F

NST

Number of sediment tracer-type variables, NST=NCS+NNS.

CPP = SEDIMENT

routine = mod_param.F

NT

Total number of tracer-type variables for each nested grid. Currently, NT=NAT+NPT+NST+NBT.

dimension = NT(Ngrids)

CPP = SOLVE3D

routine = mod_param.F

R

rho

In situ density anomaly computed as a function of potential temperature, salinity, and depth.

$\,\sigma (\xi ,\eta ,s)=\rho (\xi ,\eta ,s)-1000$.

dimension = rho(LBi:UBi,LBj:UBj,N(ng))

pointer = OCEAN(ng)%rho

tangent = tl_rho

adjoint = ad_rho

units = kilogram meter^-3

grid = ρ-points

CPP = SOLVE3D, NONLIN_EOS

routine = rho_eos.F

It can computed using a linear or nonlinear equation of state. The nonlinear equation of state is based on Jackett and McDougall (1992) polynomial expressions.

T

t

Tracer-type variables, $\,T(\xi ,\eta ,s,t,itrc)$.

dimension = t(LBi:UBi,LBj:UBj,N(ng),3,NT(ng))

pointer = OCEAN(ng)%t

tangent = tl_t

adjoint = ad_t

grid = ρ-points

CPP = SOLVE3D

routine = step3d_t.F

This array contains all the tracer fields. They are classified as active (potential temperature, salinity), inert (dyes, pollutants, oil spills, etc), passive (sediment, biology). There is a index identifier for each tracer field (see table below). Notice that salinity does not have physical units. Usually PSU is used to indicate that the practical salinity scale was used to determine conductivity.

Index	Field	Units	CPP
itemp	Potential temperature	Celsius	SOLVE3D
isalt	Salinity	None	SALINITY
inert(1:NPT)	NPT inert tracers	kilogram meter-3	T_PASSIVE
idsed(1:NST)	NST sediment tracers	kilogram meter-3	SEDIMENT
idbio(1:NBT)	NBT biology tracers	millimole meter-3	BIOLOGY

U

UBi

Array upper bound dimension in the i-direction.

UBj

Array upper bound dimension in the j-direction.

u

Total momentum component in the ξ-direction, $\,u(\xi ,\eta ,s,t)$.

dimension = u(LBi:UBi,LBj:UBj,N(ng),2)

pointer = OCEAN(ng)%u

tangent = tl_u

adjoint = ad_u

units = meter second^-1

grid = u-points

CPP = SOLVE3D

routine = step3d_uv.F

ubar

Vertically-integrated momentum component in the ξ-direction, ${\bar {u}}(\xi ,\eta ,t)$.

${\bar {u}}={\frac {1}{D}}\int _{-h}^{\zeta }u\,H_{z}\,dz$

dimension = ubar(LBi:UBi,LBj:UBj,3)

pointer = OCEAN(ng)%ubar

tangent = tl_ubar

adjoint = ad_ubar

units = meter second^-1

grid = u-points

routine = step2d.F

V

v

3D momentum component in the η-direction, $\,v(\xi ,\eta ,s,t)$.

dimension = v(LBi:UBi,LBj:UBj,N(ng),2)

pointer = OCEAN(ng)%v

tangent = tl_u

adjoint = ad_u

units = meter second^-1

grid = v-points

CPP = SOLVE3D

routine = step3d_uv.F

vbar

Vertically-integrated momentum component in the η-direction, ${\bar {v}}(\xi ,\eta ,t)$.

${\bar {v}}={\frac {1}{D}}\int _{-h}^{\zeta }v\,H_{z}\,dz$

dimension = vbar(LBi:UBi,LBj:UBj,3)

pointer = OCEAN(ng)%vbar

tangent = tl_vbar

adjoint = ad_vbar

units = meter second^-1

grid = v-points

routine = step2d.F

W

W

Terrain-following, vertical velocity component, $\,\Omega (\xi ,\eta ,s)\,Hz/mn$.

dimension = W(LBi:UBi,LBj:UBj,0:N(ng))

pointer = OCEAN(ng)%W

tangent = tl_W

adjoint = ad_W

units = meter³ second^-1

sign = positive downwards (downwelling), negative upwards (upwelling)

grid = w-points

CPP = SOLVE3D

routine = omega.F

wvel

True vertical velocity component, $\,w(\xi ,\eta ,s)$. It is computed only for output purposes.

dimension = wvel(LBi:UBi,LBj:UBj,0:N(ng))

pointer = OCEAN(ng)%wvel

units = meter second^-1

sign = positive downwards (downwelling), negative upwards (upwelling

grid = w-points

CPP = SOLVE3D

routine = wvelocity.F

Z

zeta

Free-surface, $\,\zeta (\xi ,\eta ,t)$.

dimension = zeta(LBi:UBi,LBj:UBj,3)

pointer = OCEAN(ng)%zeta

tangent = tl_zeta

adjoint = ad_zeta

units = meter

grid = ρ-points

routine = step2d.F

z_r

Actual depths of variables at ρ-points, $\,Z_{r}(\xi ,\eta ,s)$.

dimension = z_r(LBi:UBi,LBj:UBj,N(ng))

pointer = GRID(ng)%z_r

units = meter

sign = negative downwards

grid = ρ-points

CPP = SOLVE3D

routine = set_depths.F

z_w

Actual depths of variables at w-points, $\,Z_{w}(\xi ,\eta ,s)$.

dimension = z_w(LBi:UBi,LBj:UBj,0:N(ng))

pointer = GRID(ng)%z_w

units = meter

sign = negative downwards

grid = w-points

CPP = SOLVE3D

routine = set_depths.F