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Bibliography

The following references list follows the the American Meteorological Society (AMS) guidelines for citation style (PDF).

Contents

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

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Arango, H. G., A. M. Moore, A. J. Miller, B. D. Cornuelle, E. Di Lorenzo, and D. J. Neilson, 2003: The ROMS Tangent Linear and Adjoint Models: A comprehensive ocean prediction and analysis system, IMCS Technical Reports, Rutgers Univeristy, 69pp. (PDF)

B

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Bissett, W. P., K. L. Carder, J. J. Walsh, D. A. Dieterle, 1999b: Carbon cycling in the upper waters of the Sargasso Sea: II. Numerical simulation of apparent and inherent optical properties, Deep-Sea Res., 46, 271-317.

Bissett, W., Arnone, R., DeBra, S., Dieterle, D., Dye, D., Kirkpatrick, G., Schofield, O. and Vargo, G., 2005. Predicting the optical properties of the West Florida Shelf: Resolving the potential impacts of a terrestrial boundary condition on the distribution of colored dissolved and particulate matter. Marine Chemistry, 95(3-4), 199-233.

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C

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D

Daley, R., 1991: Atmospheric Data Analysis, Cambridge Atmospheric and Space Science Series, Cambridge University Press, 457 pages.

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Dekshenieks, M.M., E.E. Hofmann, J.M. Klinck, and E.N. Powell, 1996: Modeling the vertical distribution of oyster larvae in response to environmental conditions, Mar. Ecol. Prog. Ser., 136, 97-110.

Dekshenieks, M.M., E.E. Hofmann, J.M. Klinck, and E.N. Powell, 1997: A modeling study of the effect of size- and depth-dependent predation on larval survival, J.Plankton Res., 19, (11), 1583-1598.

Di Lorenzo, E., 2003: Seasonal dynamics of the surface circulation in the southern California Current System, Deep-Sea Res., Part II, 50, 2371-2388.

Di Lorenzo, E., A.M. Moore, H.G. Arango, B.D. Cornuelle, A.J. Miller, B. Powell, B.S. Chua, and A.F. Bennett, 2006: Weak and Strong Constraint Data Assimilation in the inverse Regional Ocean Modeling System (ROMS): development and applications for a baroclinic costal upwelling system, Ocean Modelling, in press.

Dinniman, M. S. and J. M. Klinck, 2002: The influence of open versus periodic alongshore boundaries on circulations near submarine canyons, J. Atmos. Oceanic Tech., 19, 1722-1737 (PDF)

Dinniman, M. S., J. M. Klinck, and W. O. Smith Jr., 2003: Cross shelf exchange in a model of the Ross Sea circulation and biogeochemistry, Deep-Sea Res., Part II, 50, 3103-3120. (PDF)

Dinniman, M. S. and J. M. Klinck, 2004: A model study of circulation and cross shelf exchange on the west Antarctic Peninsula continental shelf, Deep-Sea Res., Part II, 51, 2003-2022. (PDF)

Doyle, J. D., Q. Jiang, and J. Farrara, 2009: High-resolution atmospheric modeling over the Monterrey Bay during AOSN II, Deep-Sea Res., Part II, 56, 87-99.

Durski, S. M., S. M. Glenn, D. B. Haidvogel, 2004: Vertical mixing schemes in the coastal ocean: Comparison of the Level 2.5 Mellor-Yamada scheme with an enhanced version of the K-profile parameterization, J. Geophys. Res., 109, C01015, doi:10.1029/2002JC001702. (PDF)

E

Ezer, T., H. G. Arango and A. F. Shchepetkin, 2002: Developments in terrain-following ocean models: intercomparisons of numerical aspects, Ocean Modelling, 4, 249-267. (PDF)

F

Fairall, C. W., E. F. Bradley, D. P. Rogers, J. B. Edson and G. S. Young, 1996: Bulk parameterization of air-sea fluxes for tropical ocean-global atmosphere Coupled-Ocean Atmosphere Response Experiment, J. Geophys. Res., 101, 3747-3764.

Fairall, C. W., E. F. Bradley, J. E. Hare, A. A. Grachev and J. B. Edson (2003): Bulk parameterization of air-sea fluxes: Updates and verification for the COARE algorithm. J. Clim., 16 (4) 571-591, doi: 10.1175/1520-0442(2003)016<0571:BPOASF>2.0.CO;2.

Fasham, M. J. R., H. W. Ducklow, and S. M. McKelvie, 1990: A nitrogen-based model of plankton dynamics in the oceanic mixed layer, J. Mar. Res., 48, 591-639.

Fedorov, K. N., 1988: Layer thicknesses and effective diffusivities in the diffusive thermocline convection in the ocean, In J.C.J. Nihoul and B.M. Jamart, editors, Small-scale turbulence and mixing in the ocean, pages 471-479, Elsevier, New York.

Fennel, K., J. Wilkin, M. Previdi, R. Najjar, 2008: Denitrification effects on air-sea CO2 flux in the coastal ocean: Simulations for the Northwest North Atlantic, Geophys. Res. Let., 35, L24608. (PDF)

Fennel, K., J. Wilkin, J. Levin, J. Moisan, J. O'Reilly, and D. Haidvogel, 2006: Nitrogen cycling in the Middle Atlantic Bight: Results from a three-dimensional model and implications for the North Atlantic nitrogen budget, Global Biogeochem. Cycles, 20, GB3007, doi:10.1029/2005GB002456. (PDF)

Fiechter, J., A.M. Moore, C.A. Edwards, K.W. Bruland, E. Di Lorenzo, C.V.W. Lewis, T.M. Powell, E. Curchitser, and K. Hedstrom, 2009: Modeling iron limitation of primary production in the coastal Gulf of Alaska, Deep_Sea Res. II, 56(24), 2503-2519. (PDF)

Fisher, M. and P. Courtier, 1995: Estimating the covariance matrices of analysis and forecast error in variational data assimilation, ECMWF Technical Memo N. 220, ECMWF, Reading, UK. PDF

Fisher, M., 1997: Efficient minimization of quadratic penalty functions. Unpublished manuscript.

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Flather, R. A., 1976: A tidal model of the northwest European continental shelf. "Memoires de la Societe Royale de Sciences de Liege, 6, 141-164.

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G

Galperin, B., L. H. Kantha, S. Hassid, and A. Rosati, 1988: A quasi-equilibrium turbulent energy model for geophysical flows, J. Atmos. Sci., 45, 55-62.

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H

Haidvogel, D. B. and A. Beckmann, 1999: Numerical Ocean Circulation Modeling. Series on Environmental Science and Management, Vol. 2, Imperial College Press, 319 pp.

Haidvogel, D. B., H. G. Arango, K. Hedstrom, A. Beckmann, P. Malanotte-Rizzoli, and A. F. Shchepetkin, 2000: Model evaluation experiments in the North Atlantic Basin: Simulations in nonlinear terrain-following coordinates, Dyn. Atmos. Oceans, 32, 239-281. (PDF)

Hakkinen, S. and G. L. Mellor, 1992: Modeling the seasonal variability of a coupled arctic ice-ocean system, J. Geophys. Res., 97, 20285-20304.

He, R., and J. L. Wilkin, 2006a: Barotropic tides on the southeast New England shelf: A view from a hybrid data assimilative modeling approach, J. Geophys. Res., 111, C08002, doi:10.1029/2005JC003254. (PDF)

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Hunke, E. C. and J. K. Dukowicz, 1997: An elastic-viscous-plastic model for sea ice dynamics, J. Phys. Oceanogr., 27, 1849-1868.

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J

Jackett, D. R. and T. J. McDougall, 1995: Minimal Adjustment of Hydrostatic Profiles to Achieve Static Stability, J. Atmos. Oceanic Techn., 12, 381-389.

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Kantha, L.H., C.A. Clayson, 1994: Nermerical Models of Oceans and Oceanic Processes. In: International Geophysics Series, Vol. 66. Academic Press, San Diego. 940 pp.

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