Dear ROMS community,
I am encountering an error when trying to read the variable Vtransform from my NetCDF input file. Below is the error message I am getting:
Here are the details:
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Model Input Parameters: ROMS/TOMS version 4.1
Monday - December 2, 2024 - 10:48:44 AM
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Case
Operating system : Linux
CPU/hardware : x86_64
Compiler system : ifort
Compiler command : /PARA2/app/MPI/Intel/MPICH/3.2-icc2018-dyn/bin/mpifort
Compiler flags : -fp-model precise -heap-arrays -ip -O3 -traceback -check uninit
OCN Communicator : 1140850688, PET size = 24
Input Script : roms_basin.in
SVN Root URL :
SVN Revision :
Local Root : /PARA/blsc865/workspace/shiyf/ROMS2023/ROMS/mydir
Header Dir : /PARA/blsc865/workspace/shiyf/work/case
Header file : case.h
Analytical Dir : /PARA/blsc865/workspace/shiyf/work/case
Resolution, Grid 01: 458x458x30, Parallel Nodes: 24, Tiling: 6x4
Physical Parameters, Grid: 01
=============================
86400 ntimes Number of timesteps for 3-D equations.
30.000 dt Timestep size (s) for 3-D equations.
20 ndtfast Number of timesteps for 2-D equations between
each 3D timestep.
1 ERstr Starting ensemble/perturbation run number.
1 ERend Ending ensemble/perturbation run number.
0 nrrec Number of restart records to read from disk.
T LcycleRST Switch to recycle time-records in restart file.
120 nRST Number of timesteps between the writing of data
into restart fields.
1 ninfo Number of timesteps between print of information
to standard output.
T ldefout Switch to create a new output NetCDF file(s).
120 nHIS Number of timesteps between the writing fields
into history file.
2880 ndefHIS Number of timesteps between creation of new
history files.
0 nQCK Number of timesteps between the writing fields
into quicksave file.
1 ntsAVG Starting timestep for the accumulation of output
time-averaged data.
120 nAVG Number of timesteps between the writing of
time-averaged data into averages file.
5.0000E+00 nl_tnu2(01) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 01: temp
5.0000E+00 nl_tnu2(02) NLM Horizontal, harmonic mixing coefficient
(m2/s) for tracer 02: salt
1.0000E+02 nl_visc2 NLM Horizontal, harmonic mixing coefficient
(m2/s) for momentum.
F LuvSponge Turning OFF sponge on horizontal momentum.
F LtracerSponge(01) Turning OFF sponge on tracer 01: temp
F LtracerSponge(02) Turning OFF sponge on tracer 02: salt
1.0000E+00 Akt_bak(01) Background vertical mixing coefficient (m2/s)
for tracer 01: temp
1.0000E+00 Akt_bak(02) Background vertical mixing coefficient (m2/s)
for tracer 02: salt
1.0000E+00 Akv_bak Background vertical mixing coefficient (m2/s)
for momentum.
5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s)
for turbulent energy.
5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s)
for turbulent generic statistical field.
2.6500E-04 rdrg Linear bottom drag coefficient (m/s).
3.0000E-03 rdrg2 Quadratic bottom drag coefficient.
2.0000E-02 Zob Bottom roughness (m).
1.0000E+01 blk_ZQ Height (m) of surface air humidity measurement.
1.0000E+01 blk_ZT Height (m) of surface air temperature measurement.
1.0000E+01 blk_ZW Height (m) of surface winds measurement.
1 lmd_Jwt Jerlov water type.
2 Vtransform S-coordinate transformation equation.
4 Vstretching S-coordinate stretching function.
7.0000E+00 theta_s S-coordinate surface control parameter.
1.0000E-01 theta_b S-coordinate bottom control parameter.
20.000 Tcline S-coordinate surface/bottom layer width (m) used
in vertical coordinate stretching.
1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.
0.000 dstart Time-stamp assigned to model initialization (days).
0.00 time_ref Reference time for units attribute (yyyymmdd.dd)
5.0000E+01 Tnudg(01) Nudging/relaxation time scale (days)
for tracer 01: temp
5.0000E+01 Tnudg(02) Nudging/relaxation time scale (days)
for tracer 02: salt
0.0000E+00 Znudg Nudging/relaxation time scale (days)
for free-surface.
0.0000E+00 M2nudg Nudging/relaxation time scale (days)
for 2D momentum.
0.0000E+00 M3nudg Nudging/relaxation time scale (days)
for 3D momentum.
0.0000E+00 obcfac Factor between passive and active
open boundary conditions.
F VolCons(1) NLM western edge boundary volume conservation.
F VolCons(2) NLM southern edge boundary volume conservation.
F VolCons(3) NLM eastern edge boundary volume conservation.
F VolCons(4) NLM northern edge boundary volume conservation.
5.000 T0 Background potential temperature (C) constant.
35.000 S0 Background salinity (PSU) constant.
1.000 gamma2 Slipperiness variable: free-slip (1.0) or
no-slip (-1.0).
F LuvSrc Turning OFF momentum point Sources/Sinks.
F LwSrc Turning OFF volume influx point Sources/Sinks.
F LtracerSrc(01) Turning OFF point Sources/Sinks on tracer 01: temp
F LtracerSrc(02) Turning OFF point Sources/Sinks on tracer 02: salt
F LsshCLM Turning OFF processing of SSH climatology.
F Lm2CLM Turning OFF processing of 2D momentum climatology.
F Lm3CLM Turning OFF processing of 3D momentum climatology.
F LtracerCLM(01) Turning OFF processing of climatology tracer 01: temp
F LtracerCLM(02) Turning OFF processing of climatology tracer 02: salt
F LnudgeM2CLM Turning OFF nudging of 2D momentum climatology.
F LnudgeM3CLM Turning OFF nudging of 3D momentum climatology.
F LnudgeTCLM(01) Turning OFF nudging of climatology tracer 01: temp
F LnudgeTCLM(02) Turning OFF nudging of climatology tracer 02: salt
T Hout(idFsur) Write out free-surface.
T Hout(idUbar) Write out 2D U-momentum component.
T Hout(idVbar) Write out 2D V-momentum component.
T Hout(idUvel) Write out 3D U-momentum component.
T Hout(idVvel) Write out 3D V-momentum component.
T Hout(idWvel) Write out W-momentum component.
T Hout(idOvel) Write out omega vertical velocity.
T Hout(idTvar) Write out tracer 01: temp
T Hout(idTvar) Write out tracer 02: salt
T Hout(idDano) Write out density anomaly.
T Aout(idFsur) Write out averaged free-surface.
T Aout(idUbar) Write out averaged 2D U-momentum component.
T Aout(idVbar) Write out averaged 2D V-momentum component.
T Aout(idUvel) Write out averaged 3D U-momentum component.
T Aout(idVvel) Write out averaged 3D V-momentum component.
T Aout(idWvel) Write out averaged W-momentum component.
T Aout(idOvel) Write out averaged omega vertical velocity.
T Aout(idTvar) Write out averaged tracer 01: temp
1 inp_lib Using standard NetCDF library for input files.
1 out_lib Using standard NetCDF library for output files.
Output/Input Files:
Output Restart File: roms_rst.nc
Prefix for History Files: roms_his
Output Averages File: roms_avg.nc
Input Grid File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc
Input Nonlinear Initial File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_ini_new.nc
Input Forcing File 01: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/sms_era_202001.nc
Input Forcing File 02: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/shflux_era_202001.nc
Input Forcing File 03: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/swflux_era_202001.nc
Input Lateral Boundary File 01: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMSbry202001.nc
ROMS I/O variables Metadata File: varinfo.yaml
Tile partition information for Grid 01: 458x458x30 tiling: 6x4
tile Istr Iend Jstr Jend Npts
0 1 75 1 114 256500
1 76 152 1 114 263340
2 153 229 1 114 263340
3 230 306 1 114 263340
4 307 383 1 114 263340
5 384 458 1 114 256500
6 1 75 115 229 258750
7 76 152 115 229 265650
8 153 229 115 229 265650
9 230 306 115 229 265650
10 307 383 115 229 265650
11 384 458 115 229 258750
12 1 75 230 344 258750
13 76 152 230 344 265650
14 153 229 230 344 265650
15 230 306 230 344 265650
16 307 383 230 344 265650
17 384 458 230 344 258750
18 1 75 345 458 256500
19 76 152 345 458 263340
20 153 229 345 458 263340
21 230 306 345 458 263340
22 307 383 345 458 263340
23 384 458 345 458 256500
Tile minimum and maximum fractional coordinates for Grid 01:
(interior points only)
tile Xmin Xmax Ymin Ymax grid
0 0.50 75.50 0.50 114.50 RHO-points
1 75.50 152.50 0.50 114.50 RHO-points
2 152.50 229.50 0.50 114.50 RHO-points
3 229.50 306.50 0.50 114.50 RHO-points
4 306.50 383.50 0.50 114.50 RHO-points
5 383.50 458.50 0.50 114.50 RHO-points
6 0.50 75.50 114.50 229.50 RHO-points
7 75.50 152.50 114.50 229.50 RHO-points
8 152.50 229.50 114.50 229.50 RHO-points
9 229.50 306.50 114.50 229.50 RHO-points
10 306.50 383.50 114.50 229.50 RHO-points
11 383.50 458.50 114.50 229.50 RHO-points
12 0.50 75.50 229.50 344.50 RHO-points
13 75.50 152.50 229.50 344.50 RHO-points
14 152.50 229.50 229.50 344.50 RHO-points
15 229.50 306.50 229.50 344.50 RHO-points
16 306.50 383.50 229.50 344.50 RHO-points
17 383.50 458.50 229.50 344.50 RHO-points
18 0.50 75.50 344.50 458.50 RHO-points
19 75.50 152.50 344.50 458.50 RHO-points
20 152.50 229.50 344.50 458.50 RHO-points
21 229.50 306.50 344.50 458.50 RHO-points
22 306.50 383.50 344.50 458.50 RHO-points
23 383.50 458.50 344.50 458.50 RHO-points
0 1.00 75.50 0.50 114.50 U-points
1 75.50 152.50 0.50 114.50 U-points
2 152.50 229.50 0.50 114.50 U-points
3 229.50 306.50 0.50 114.50 U-points
4 306.50 383.50 0.50 114.50 U-points
5 383.50 458.00 0.50 114.50 U-points
6 1.00 75.50 114.50 229.50 U-points
7 75.50 152.50 114.50 229.50 U-points
8 152.50 229.50 114.50 229.50 U-points
9 229.50 306.50 114.50 229.50 U-points
10 306.50 383.50 114.50 229.50 U-points
11 383.50 458.00 114.50 229.50 U-points
12 1.00 75.50 229.50 344.50 U-points
13 75.50 152.50 229.50 344.50 U-points
14 152.50 229.50 229.50 344.50 U-points
15 229.50 306.50 229.50 344.50 U-points
16 306.50 383.50 229.50 344.50 U-points
17 383.50 458.00 229.50 344.50 U-points
18 1.00 75.50 344.50 458.50 U-points
19 75.50 152.50 344.50 458.50 U-points
20 152.50 229.50 344.50 458.50 U-points
21 229.50 306.50 344.50 458.50 U-points
22 306.50 383.50 344.50 458.50 U-points
23 383.50 458.00 344.50 458.50 U-points
0 0.50 75.50 1.00 114.50 V-points
1 75.50 152.50 1.00 114.50 V-points
2 152.50 229.50 1.00 114.50 V-points
3 229.50 306.50 1.00 114.50 V-points
4 306.50 383.50 1.00 114.50 V-points
5 383.50 458.50 1.00 114.50 V-points
6 0.50 75.50 114.50 229.50 V-points
7 75.50 152.50 114.50 229.50 V-points
8 152.50 229.50 114.50 229.50 V-points
9 229.50 306.50 114.50 229.50 V-points
10 306.50 383.50 114.50 229.50 V-points
11 383.50 458.50 114.50 229.50 V-points
12 0.50 75.50 229.50 344.50 V-points
13 75.50 152.50 229.50 344.50 V-points
14 152.50 229.50 229.50 344.50 V-points
15 229.50 306.50 229.50 344.50 V-points
16 306.50 383.50 229.50 344.50 V-points
17 383.50 458.50 229.50 344.50 V-points
18 0.50 75.50 344.50 458.00 V-points
19 75.50 152.50 344.50 458.00 V-points
20 152.50 229.50 344.50 458.00 V-points
21 229.50 306.50 344.50 458.00 V-points
22 306.50 383.50 344.50 458.00 V-points
23 383.50 458.50 344.50 458.00 V-points
Maximum halo size in XI and ETA directions:
HaloSizeI(1) = 178
HaloSizeJ(1) = 254
TileSide(1) = 121
TileSize(1) = 10043
Tracer Advection Scheme: NLM
========================
Variable Grid Horizontal Vertical
--------- ---- ------------ ------------
temp 1 Upstream3 Centered4
salt 1 Upstream3 Centered4
Akima4 Fourth-order Akima advection
Centered2 Second-order centered differences advection
Centered4 Fourth-order centered differences advection
HSIMT Third High-order Spatial Inteporlation at Middle Time Advection with TVD limiter
MPDATA Multidimensional Positive Definite Advection Algorithm, recursive method
Splines Conservative Parabolic Splines Reconstruction Advection (only vertical; not recommended)
Split_U3 Split third-order Upstream Advection
Upstream3 Third-order Upstream-biased Advection (only horizontal)
Lateral Boundary Conditions: NLM
============================
Variable Grid West Edge South Edge East Edge North Edge
--------- ---- ---------- ---------- ---------- ----------
zeta 1 Closed Chapman Imp Chapman Imp Chapman Imp
ubar 1 Closed Flather Flather Flather
vbar 1 Closed Flather Flather Flather
u 1 Closed Radiation Radiation Radiation
v 1 Closed Radiation Radiation Radiation
temp 1 Closed Radiation Radiation Radiation
salt 1 Closed Radiation Radiation Radiation
tke 1 Closed Radiation Radiation Radiation
Activated C-preprocessing Options:
CASE Case
ANA_BSFLUX Analytical kinematic bottom salinity flux
ANA_BTFLUX Analytical kinematic bottom temperature flux
ASSUMED_SHAPE Using assumed-shape arrays
AVERAGES Writing out time-averaged nonlinear model fields
BOUNDARY_ALLREDUCE Using mpi_allreduce in mp_boundary routine
BULK_FLUXES Surface bulk fluxes parameterization
COLLECT_ALLREDUCE Using mpi_allreduce in mp_collect routine
CURVGRID Orthogonal curvilinear grid
DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002)
DOUBLE_PRECISION Double precision arithmetic numerical kernel.
EMINUSP Compute Salt Flux using E-P
INLINE_2DIO Processing 3D IO level by level to reduce memory needs
KANTHA_CLAYSON Kantha and Clayson stability function formulation
LONGWAVE_OUT Compute outgoing longwave radiation internally
MASKING Land/Sea masking
MIX_GEO_TS Mixing of tracers along geopotential surfaces
MIX_S_UV Mixing of momentum along constant S-surfaces
MPI MPI distributed-memory configuration
MY25_MIXING Mellor/Yamada Level-2.5 mixing closure
NONLINEAR Nonlinear Model
NONLIN_EOS Nonlinear Equation of State for seawater
N2S2_HORAVG Horizontal smoothing of buoyancy and shear
PERFECT_RESTART Processing perfect restart variables
POWER_LAW Power-law shape time-averaging barotropic filter
PROFILE Time profiling activated
QCORRECTION Surface net heat flux correction
K_GSCHEME Third-order upstream advection of TKE fields
REDUCE_ALLREDUCE Using mpi_allreduce in mp_reduce routine
!RST_SINGLE Double precision fields in restart NetCDF file
SALINITY Using salinity
SOLAR_SOURCE Solar Radiation Source Term
SOLVE3D Solving 3D Primitive Equations
TS_DIF2 Harmonic mixing of tracers
UV_ADV Advection of momentum
UV_COR Coriolis term
UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum
UV_C4VADVECTION Fourth-order centered vertical advection of momentum
UV_QDRAG Quadratic bottom stress
UV_VIS2 Harmonic mixing of momentum
VAR_RHO_2D Variable density barotropic mode
Process Information:
Node # 0 (pid= 19668) is active.
Node # 4 (pid= 19672) is active.
Node # 1 (pid= 19669) is active.
Node # 8 (pid= 19676) is active.
Node # 12 (pid= 19680) is active.
Node # 13 (pid= 19681) is active.
Node # 5 (pid= 19673) is active.
Node # 2 (pid= 19670) is active.
Node # 6 (pid= 19674) is active.
Node # 16 (pid= 19684) is active.
Node # 20 (pid= 19688) is active.
Node # 17 (pid= 19685) is active.
Node # 21 (pid= 19689) is active.
Node # 7 (pid= 19675) is active.
Node # 3 (pid= 19671) is active.
Node # 9 (pid= 19677) is active.
Node # 18 (pid= 19686) is active.
Node # 10 (pid= 19678) is active.
Node # 14 (pid= 19682) is active.
Node # 22 (pid= 19690) is active.
Node # 11 (pid= 19679) is active.
Node # 19 (pid= 19687) is active.
Node # 23 (pid= 19691) is active.
Node # 15 (pid= 19683) is active.
INITIAL: Configuring and initializing forward nonlinear model ...
*******
GET_GRID_NF90 - angle between XI-axis and EAST: angler
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = -1.16873941E-11 Max = 1.08414827E-11)
GET_GRID_NF90 - bathymetry at RHO-points: h
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.00000000E+00 Max = 5.00000000E+03)
GET_GRID_NF90 - Coriolis parameter at RHO-points: f
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 3.90074113E-05 Max = 9.67909351E-05)
GET_GRID_NF90 - reciprocal XI-grid spacing: pm
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.28086945E-04 Max = 1.64996598E-04)
GET_GRID_NF90 - reciprocal ETA-grid spacing: pn
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.23003870E-04 Max = 2.03872551E-04)
GET_GRID_NF90 - XI-derivative of inverse metric factor pn: dndx
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = -1.71997135E-06 Max = 1.36568451E-06)
GET_GRID_NF90 - ETA-derivative of inverse metric factor pm: dmde
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = -4.14806884E+00 Max = 0.00000000E+00)
GET_GRID_NF90 - longitude of RHO-points: lon_rho
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.04327500E+02 Max = 1.37771597E+02)
GET_GRID_NF90 - longitude of U-points: lon_u
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.04363932E+02 Max = 1.37735165E+02)
GET_GRID_NF90 - longitude of V-points: lon_v
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.04327500E+02 Max = 1.37771597E+02)
GET_GRID_NF90 - longitude of PSI-points: lon_psi
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.04363932E+02 Max = 1.37735165E+02)
GET_GRID_NF90 - latitude of RHO-points lat_rho
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.55136038E+01 Max = 4.15810561E+01)
GET_GRID_NF90 - latitude of U-points: lat_u
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.55136038E+01 Max = 4.15810561E+01)
GET_GRID_NF90 - latitude of V-points: lat_v
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.55501586E+01 Max = 4.15590012E+01)
GET_GRID_NF90 - latitude of PSI-points lat_psi
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 1.55501586E+01 Max = 4.15590012E+01)
GET_GRID_NF90 - mask on RHO-points: mask_rho
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 0.00000000E+00 Max = 1.00000000E+00)
GET_GRID_NF90 - mask on U-points: mask_u
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 0.00000000E+00 Max = 1.00000000E+00)
GET_GRID_NF90 - mask on V-points: mask_v
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 0.00000000E+00 Max = 1.00000000E+00)
GET_GRID_NF90 - mask on PSI-points: mask_psi
(Grid = 01, File: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_grid.nc)
(Min = 0.00000000E+00 Max = 1.00000000E+00)
Vertical S-coordinate System, Grid 01:
level S-coord Cs-curve Z at hmin at hc half way at hmax
30 0.0000000 0.0000000 0.000 0.000 0.000 0.000
29 -0.0333333 -0.0000525 -0.032 -0.334 -0.792 -0.925
28 -0.0666667 -0.0002129 -0.064 -0.669 -1.851 -2.388
27 -0.1000000 -0.0004899 -0.095 -1.005 -3.199 -4.432
26 -0.1333333 -0.0008987 -0.127 -1.342 -4.875 -7.132
25 -0.1666667 -0.0014616 -0.159 -1.681 -6.933 -10.599
24 -0.2000000 -0.0022095 -0.191 -2.022 -9.449 -14.987
23 -0.2333333 -0.0031830 -0.222 -2.365 -12.526 -20.500
22 -0.2666667 -0.0044355 -0.254 -2.711 -16.294 -27.401
21 -0.3000000 -0.0060353 -0.286 -3.060 -20.924 -36.032
20 -0.3333333 -0.0080696 -0.318 -3.414 -26.632 -46.828
19 -0.3666667 -0.0106496 -0.350 -3.773 -33.693 -60.340
18 -0.4000000 -0.0139158 -0.382 -4.139 -42.457 -77.270
17 -0.4333333 -0.0180461 -0.414 -4.514 -53.364 -98.503
16 -0.4666667 -0.0232653 -0.446 -4.899 -66.973 -125.159
15 -0.5000000 -0.0298569 -0.478 -5.299 -83.985 -158.650
14 -0.5333333 -0.0381784 -0.510 -5.715 -105.290 -200.756
13 -0.5666667 -0.0486802 -0.542 -6.153 -132.002 -253.720
12 -0.6000000 -0.0619292 -0.574 -6.619 -165.530 -320.364
11 -0.6333333 -0.0786377 -0.607 -7.120 -207.639 -404.238
10 -0.6666667 -0.0997005 -0.640 -7.664 -260.551 -509.797
9 -0.7000000 -0.1262391 -0.673 -8.262 -327.045 -642.625
8 -0.7333333 -0.1596562 -0.706 -8.930 -410.603 -809.709
7 -0.7666667 -0.2017025 -0.740 -9.684 -515.567 -1019.767
6 -0.8000000 -0.2545552 -0.774 -10.546 -647.338 -1283.641
5 -0.8333333 -0.3209111 -0.809 -11.542 -812.605 -1614.763
4 -0.8666667 -0.4040926 -0.845 -12.708 -1019.612 -2029.678
3 -0.9000000 -0.5081650 -0.881 -14.082 -1278.441 -2548.631
2 -0.9333333 -0.6380580 -0.919 -15.714 -1601.323 -3196.172
1 -0.9666667 -0.7996795 -0.959 -17.663 -2002.912 -4001.724
0 -1.0000000 -1.0000000 -1.000 -20.000 -2500.500 -5000.000
Time Splitting Weights for Grid 01: ndtfast = 20 nfast = 29
==================================
Primary Secondary Accumulated to Current Step
1-0.0009651193358779 0.0500000000000000-0.0009651193358779 0.0500000000000000
2-0.0013488780126037 0.0500482559667939-0.0023139973484816 0.1000482559667939
3-0.0011514592651645 0.0501156998674241-0.0034654566136460 0.1501639558342179
4-0.0003735756740661 0.0501732728306823-0.0038390322877122 0.2003372286649002
5 0.0009829200513762 0.0501919516143856-0.0028561122363360 0.2505291802792858
6 0.0029141799764308 0.0501428056118168 0.0000580677400948 0.3006719858911026
7 0.0054132615310267 0.0499970966129952 0.0054713292711215 0.3506690825040978
8 0.0084687837865132 0.0497264335364439 0.0139401130576347 0.4003955160405417
9 0.0120633394191050 0.0493029943471183 0.0260034524767397 0.4496985103876600
10 0.0161716623600090 0.0486998273761630 0.0421751148367486 0.4983983377638230
11 0.0207585511322367 0.0478912442581626 0.0629336659689853 0.5462895820219856
12 0.0257765478740990 0.0468533167015507 0.0887102138430843 0.5931428987235363
13 0.0311633730493853 0.0455644893078458 0.1198735868924696 0.6387073880313821
14 0.0368391158442262 0.0440063206553765 0.1567127027366958 0.6827137086867585
15 0.0427031802506397 0.0421643648631652 0.1994158829873354 0.7248780735499237
16 0.0486309868367616 0.0400292058506332 0.2480468698240970 0.7649072794005569
17 0.0544704302037591 0.0375976565087951 0.3025173000278562 0.8025049359093520
18 0.0600380921294285 0.0348741349986072 0.3625553921572847 0.8373790709079592
19 0.0651152103984763 0.0318722303921358 0.4276706025557610 0.8692513013000949
20 0.0694434033194839 0.0286164698722119 0.4971140058752449 0.8978677711723068
21 0.0727201499285569 0.0251442997062377 0.5698341558038018 0.9230120708785445
22 0.0745940258796570 0.0215082922098099 0.6444281816834588 0.9445203630883544
23 0.0746596950216180 0.0177785909158270 0.7190878767050768 0.9622989540041814
24 0.0724526566618460 0.0140456061647461 0.7915405333669228 0.9763445601689276
25 0.0674437485167025 0.0104229733316538 0.8589842818836253 0.9867675335005814
26 0.0590334053485720 0.0070507859058187 0.9180176872321973 0.9938183194064002
27 0.0465456732896125 0.0040991156383901 0.9645633605218099 0.9979174350447904
28 0.0292219798521905 0.0017718319739095 0.9937853403740005 0.9996892670186999
29 0.0062146596259994 0.0003107329813000 0.9999999999999999 0.9999999999999999
ndtfast, nfast = 20 29 nfast/ndtfast = 1.45000
Centers of gravity and integrals (values must be 1, 1, approx 1/2, 1, 1):
1.000000000000 1.060707743385 0.530353871693 1.000000000000 1.000000000000
Power filter parameters, Fgamma, gamma = 0.28400 0.14200
Metrics information for Grid 01:
===============================
Minimum X-grid spacing, DXmin = 6.06073102E+00 km Water points = 6.06073102E+00 km
Maximum X-grid spacing, DXmax = 7.80719691E+00 km Water points = 7.80719691E+00 km
Minimum Y-grid spacing, DYmin = 4.90502521E+00 km Water points = 4.90502521E+00 km
Maximum Y-grid spacing, DYmax = 8.12982548E+00 km Water points = 8.12982548E+00 km
Minimum Z-grid spacing, DZmin = 3.17485319E-02 m Water points = 1.33385837E-01 m
Maximum Z-grid spacing, DZmax = 9.98275888E+02 m Water points = 9.98275888E+02 m
Minimum barotropic Courant Number = 1.86558726E-03
Maximum barotropic Courant Number = 7.49584776E-02
Maximum Coriolis Courant Number = 2.90372805E-03
Found Error: 10 Line: 4590 Source: ROMS/Modules/mod_netcdf.F, netcdf_get_ivar_0d
NETCDF_GET_IVAR_0D - error while reading variable: Vtransform
in input file: /PARA/blsc865/workspace/shiyf/ROMS2023/Data/ROMS_ini_new.nc
call from: ROMS/Utility/checkvars.F, checkvars_nf90
No child processes
Found Error: 02 Line: 826 Source: ROMS/Modules/mod_netcdf.F, netcdf_check_var
Found Error: 02 Line: 123 Source: ROMS/Utility/checkvars.F, checkvars_nf90
Found Error: 02 Line: 314 Source: ROMS/Utility/get_state.F, get_state_nf90
Found Error: 02 Line: 151 Source: ROMS/Utility/get_state.F
Found Error: 02 Line: 416 Source: ROMS/Nonlinear/initial.F
Found Error: 02 Line: 197 Source: ROMS/Drivers/nl_roms.h, ROMS_initialize
Elapsed wall CPU time for each process (seconds):
Node # 0 CPU: 5.313
Node # 1 CPU: 5.311
Node # 8 CPU: 5.315
Node # 9 CPU: 5.305
Node # 10 CPU: 5.310
Node # 11 CPU: 5.312
Node # 2 CPU: 5.316
Node # 16 CPU: 5.316
Node # 17 CPU: 5.314
Node # 12 CPU: 5.317
Node # 20 CPU: 5.311
Node # 4 CPU: 5.310
Node # 6 CPU: 5.309
Node # 14 CPU: 5.310
Node # 18 CPU: 5.320
Node # 3 CPU: 5.307
Node # 15 CPU: 5.306
Node # 13 CPU: 5.310
Node # 19 CPU: 5.313
Node # 21 CPU: 5.313
Node # 22 CPU: 5.307
Node # 5 CPU: 5.312
Node # 7 CPU: 5.311
Node # 23 CPU: 5.310
Total: 127.483
Average: 5.312
Minimum: 5.305
Maximum: 5.320
Nonlinear model elapsed CPU time profile, Grid: 01
Allocation and array initialization .............. 2.121 ( 1.6635 %)
Total: 2.121 1.6635 %
Unique kernel(s) regions profiled ................ 2.121 1.6635 %
Residual, non-profiled code ...................... 125.362 98.3365 %
All percentages are with respect to total time = 127.483
MPI communications profile, Grid: 01
Message Passage: 2D halo exchanges ............... 6.896 ( 5.4093 %)
Message Passage: 3D halo exchanges ............... 0.902 ( 0.7074 %)
Message Passage: data broadcast .................. 8.906 ( 6.9858 %)
Message Passage: data reduction .................. 10.099 ( 7.9222 %)
Message Passage: data scattering.................. 97.808 (76.7227 %)
Message Passage: point data gathering ............ 0.578 ( 0.4533 %)
Message Passage: synchronization barrier ......... 0.894 ( 0.7012 %)
Total: 126.083 98.9020 %
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
Dynamic and Automatic memory (MB) usage for Grid 01: 458x458x30 tiling: 6x4
tile Dynamic Automatic USAGE MPI-Buffers
0 109.59 16.95 126.54 1.69
1 0.00 17.37 17.37 0.00
2 0.00 17.37 17.37 0.00
3 0.00 17.37 17.37 0.00
4 0.00 17.37 17.37 0.00
5 0.00 16.95 16.95 0.00
6 0.00 17.09 17.09 0.00
7 0.00 17.52 17.52 0.00
8 0.00 17.52 17.52 0.00
9 0.00 17.52 17.52 0.00
10 0.00 17.52 17.52 0.00
11 0.00 17.09 17.09 0.00
12 0.00 17.09 17.09 0.00
13 0.00 17.52 17.52 0.00
14 0.00 17.52 17.52 0.00
15 0.00 17.52 17.52 0.00
16 0.00 17.52 17.52 0.00
17 0.00 17.09 17.09 0.00
18 0.00 16.95 16.95 0.00
19 0.00 17.37 17.37 0.00
20 0.00 17.37 17.37 0.00
21 0.00 17.37 17.37 0.00
22 0.00 17.37 17.37 0.00
23 0.00 16.95 16.95 0.00
TOTAL 109.59 415.32 524.90 1.69
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
Found Error: 02 Line: 85 Source: ROMS/Utility/close_io.F, close_file_nf90
ROMS/TOMS - Output NetCDF summary for Grid 01:
Found Error: 02 Line: 401 Source: ROMS/Utility/close_io.F, close_out
ROMS/TOMS - Input error ............. exit_flag: 2
ERROR: Abnormal termination: NetCDF INPUT.
REASON: No child processes
The NetCDF file has been checked for the presence of the Vtransform variable, and the file seems to be valid.
I am confident that the issue is not with the NetCDF file itself but might be related to how the ROMS model is handling it.
Has anyone encountered a similar issue, or does anyone have suggestions on what might be causing this error? Any help or guidance would be greatly appreciated.
Thank you!
Best regards,
Rui