ecosim_mod.h File Reference

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Modules
module	mod_biology

Functions/Subroutines
subroutine	mod_biology::initialize_biology

Variables
integer, parameter	mod_biology::nbands = 60
integer, parameter	mod_biology::nbac = 1
integer, parameter	mod_biology::ndom = 2
integer, parameter	mod_biology::nfec = 2
integer, parameter	mod_biology::nphy = 4
integer, parameter	mod_biology::npig = 7
integer	mod_biology::ndbands = NBands
integer, dimension(7, 7), parameter	mod_biology::pig = reshape ( (/ 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0 /), (/ 7, 7 /) )
integer, dimension(nphy), parameter	mod_biology::phy = (/ 1, 2, 4, 5 /)
integer, dimension(:), allocatable	mod_biology::idbio
integer, dimension(nbac)	mod_biology::ibacc
integer, dimension(nbac)	mod_biology::ibacn
integer, dimension(nbac)	mod_biology::ibacp
integer, dimension(nbac)	mod_biology::ibacf
integer, dimension(ndom)	mod_biology::icdmc
integer, dimension(ndom)	mod_biology::idomc
integer, dimension(ndom)	mod_biology::idomn
integer, dimension(ndom)	mod_biology::idomp
integer, dimension(nfec)	mod_biology::ifecc
integer, dimension(nfec)	mod_biology::ifecn
integer, dimension(nfec)	mod_biology::ifecp
integer, dimension(nfec)	mod_biology::ifecf
integer, dimension(nfec)	mod_biology::ifecs
integer, dimension(nphy)	mod_biology::iphyc
integer, dimension(nphy)	mod_biology::iphyn
integer, dimension(nphy)	mod_biology::iphyp
integer, dimension(nphy)	mod_biology::iphyf
integer, dimension(nphy)	mod_biology::iphys
integer, dimension(nphy, npig)	mod_biology::ipigs
integer	mod_biology::ino3_
integer	mod_biology::inh4_
integer	mod_biology::ipo4_
integer	mod_biology::ifeo_
integer	mod_biology::isio_
integer	mod_biology::idic_
integer	mod_biology::firstpig
real(r8), dimension(:), allocatable	mod_biology::dia_light
integer, dimension(:), allocatable	mod_biology::idbio3
integer	mod_biology::idspir = 1
integer, dimension(:), allocatable	mod_biology::idbio4
integer	mod_biology::iddirr = 1
integer	mod_biology::idsirr = 2
integer	mod_biology::idlatt = 3
integer	mod_biology::idaphy = 4
integer	mod_biology::idadet = 5
integer	mod_biology::idacdc = 6
integer	mod_biology::idacos = 7
integer	mod_biology::idbphy = 8
integer	mod_biology::idsphy = 9
integer	mod_biology::idbtot = 10
integer	mod_biology::idstot = 11
character(len=16), dimension(nbac)	mod_biology::bacname
character(len=11), dimension(ndom)	mod_biology::domname
character(len=13), dimension(nfec)	mod_biology::fecname
character(len=21), dimension(nphy)	mod_biology::phyname
character(len=39), dimension(7)	mod_biology::pigname = (/ 'chlorophyll-a ', 'chlorophyll-b ', 'chlorophyll-c ', 'photosynthetic carotenoids ', 'photoprotective carotenoids ', 'low urobilin phycoeurythin carotenoids ', 'high urobilin phycoeurythin carotenoids' /)
integer, dimension(:), allocatable	mod_biology::bioiter
logical, dimension(:), allocatable	mod_biology::rtuvr_flag
logical, dimension(:), allocatable	mod_biology::nfix_flag
logical, dimension(:), allocatable	mod_biology::regen_flag
real(r8), dimension(:,:), allocatable	mod_biology::hsno3
real(r8), dimension(:,:), allocatable	mod_biology::hsnh4
real(r8), dimension(:,:), allocatable	mod_biology::hssio
real(r8), dimension(:,:), allocatable	mod_biology::hspo4
real(r8), dimension(:,:), allocatable	mod_biology::hsfe
real(r8), dimension(:,:), allocatable	mod_biology::gtalg_max
real(r8), dimension(:,:), allocatable	mod_biology::phytbase
real(r8), dimension(:,:), allocatable	mod_biology::phytfac
real(r8), dimension(:,:), allocatable	mod_biology::bet_
real(r8), dimension(:,:), allocatable	mod_biology::maxc2nalg
real(r8), dimension(:,:), allocatable	mod_biology::minc2nalg
real(r8), dimension(:,:), allocatable	mod_biology::c2nalgminabs
real(r8), dimension(:,:), allocatable	mod_biology::maxc2sialg
real(r8), dimension(:,:), allocatable	mod_biology::minc2sialg
real(r8), dimension(:,:), allocatable	mod_biology::c2sialgminabs
real(r8), dimension(:,:), allocatable	mod_biology::maxc2palg
real(r8), dimension(:,:), allocatable	mod_biology::minc2palg
real(r8), dimension(:,:), allocatable	mod_biology::c2palgminabs
real(r8), dimension(:,:), allocatable	mod_biology::maxc2fealg
real(r8), dimension(:,:), allocatable	mod_biology::minc2fealg
real(r8), dimension(:,:), allocatable	mod_biology::c2fealgminabs
real(r8), dimension(:,:), allocatable	mod_biology::qu_yld
real(r8), dimension(:,:), allocatable	mod_biology::e0_comp
real(r8), dimension(:,:), allocatable	mod_biology::e0_inhib
real(r8), dimension(:,:), allocatable	mod_biology::inhib_fac
real(r8), dimension(:,:), allocatable	mod_biology::c2chl_max
real(r8), dimension(:,:), allocatable	mod_biology::mxc2cl
real(r8), dimension(:,:), allocatable	mod_biology::b_c2cl
real(r8), dimension(:,:), allocatable	mod_biology::mxc2cn
real(r8), dimension(:,:), allocatable	mod_biology::b_c2cn
real(r8), dimension(:,:), allocatable	mod_biology::mxpaceff
real(r8), dimension(:,:), allocatable	mod_biology::b_paceff
real(r8), dimension(:,:), allocatable	mod_biology::mxchlb
real(r8), dimension(:,:), allocatable	mod_biology::b_chlb
real(r8), dimension(:,:), allocatable	mod_biology::mxchlc
real(r8), dimension(:,:), allocatable	mod_biology::b_chlc
real(r8), dimension(:,:), allocatable	mod_biology::mxpsc
real(r8), dimension(:,:), allocatable	mod_biology::b_psc
real(r8), dimension(:,:), allocatable	mod_biology::mxppc
real(r8), dimension(:,:), allocatable	mod_biology::b_ppc
real(r8), dimension(:,:), allocatable	mod_biology::mxlpub
real(r8), dimension(:,:), allocatable	mod_biology::b_lpub
real(r8), dimension(:,:), allocatable	mod_biology::mxhpub
real(r8), dimension(:,:), allocatable	mod_biology::b_hpub
real(r8), dimension(:,:), allocatable	mod_biology::fecdoc
real(r8), dimension(:,:,:), allocatable	mod_biology::fecpel
real(r8), dimension(:,:), allocatable	mod_biology::feccyc
real(r8), dimension(:,:), allocatable	mod_biology::exalg
real(r8), dimension(:,:), allocatable	mod_biology::ws
real(r8), dimension(:,:), allocatable	mod_biology::hsgrz
real(r8), dimension(:,:), allocatable	mod_biology::minrefuge
real(r8), dimension(:,:), allocatable	mod_biology::refugedep
real(r8), dimension(:,:), allocatable	mod_biology::norm_vol
real(r8), dimension(:,:), allocatable	mod_biology::norm_surf
real(r8), dimension(:,:), allocatable	mod_biology::hsdop
real(r8), dimension(:,:), allocatable	mod_biology::c2palkphos
real(r8), dimension(:,:), allocatable	mod_biology::hsdon
real(r8), dimension(:,:), allocatable	mod_biology::c2nnupdon
real(r8), dimension(:,:), allocatable	mod_biology::hsdoc_ba
real(r8), dimension(:,:), allocatable	mod_biology::gtbac_max
real(r8), dimension(:,:), allocatable	mod_biology::bactbase
real(r8), dimension(:,:), allocatable	mod_biology::bactfac
real(r8), dimension(:), allocatable	mod_biology::c2nbac
real(r8), dimension(:), allocatable	mod_biology::c2pbac
real(r8), dimension(:), allocatable	mod_biology::c2febac
real(r8), dimension(:), allocatable	mod_biology::bacdoc
real(r8), dimension(:), allocatable	mod_biology::bacpel
real(r8), dimension(:), allocatable	mod_biology::baccyc
real(r8), dimension(:), allocatable	mod_biology::exbac_c
real(r8), dimension(:), allocatable	mod_biology::exbacc2n
real(r8), dimension(:), allocatable	mod_biology::bac_ceff
real(r8), dimension(:), allocatable	mod_biology::rtnit
real(r8), dimension(:), allocatable	mod_biology::hsnit
real(r8), dimension(:,:), allocatable	mod_biology::cdocfrac_c
real(r8), dimension(:), allocatable	mod_biology::rtuvr_dic
real(r8), dimension(:), allocatable	mod_biology::rtuvr_doc
real(r8), dimension(:,:), allocatable	mod_biology::wf
real(r8), dimension(:,:), allocatable	mod_biology::regtbase
real(r8), dimension(:,:), allocatable	mod_biology::regtfac
real(r8), dimension(:,:), allocatable	mod_biology::regcr
real(r8), dimension(:,:), allocatable	mod_biology::regnr
real(r8), dimension(:,:), allocatable	mod_biology::regsr
real(r8), dimension(:,:), allocatable	mod_biology::regpr
real(r8), dimension(:,:), allocatable	mod_biology::regfr
real(r8), parameter	mod_biology::dlam = 5.0_r8
real(r8), parameter	mod_biology::small = 1.0e-6_r8
real(r8), parameter	mod_biology::vsmall = 1.0e-14_r8
real(r8), parameter	mod_biology::larger = 1.0e+10_r8
real(r8), parameter	mod_biology::vlarge = 1.0e+50_r8
integer, parameter	mod_biology::ilab =1
integer, parameter	mod_biology::irct =2
integer, parameter	mod_biology::ichl =1
integer, parameter	mod_biology::isfc =1
integer, parameter	mod_biology::iffc =2
real(r8), dimension(:,:), allocatable	mod_biology::imaxc2nalg
real(r8), dimension(:,:), allocatable	mod_biology::imaxc2sialg
real(r8), dimension(:,:), allocatable	mod_biology::imaxc2palg
real(r8), dimension(:,:), allocatable	mod_biology::imaxc2fealg
real(r8), dimension(:), allocatable	mod_biology::n2cbac
real(r8), dimension(:), allocatable	mod_biology::p2cbac
real(r8), dimension(:), allocatable	mod_biology::fe2cbac
real(r8), dimension(:,:), allocatable	mod_biology::hsnh4_ba
real(r8), dimension(:,:), allocatable	mod_biology::hspo4_ba
real(r8), dimension(:,:), allocatable	mod_biology::hsfe_ba
real(r8), dimension(:), allocatable	mod_biology::r_exbac_c
real(r8), dimension(:), allocatable	mod_biology::exbac_n
real(r8), dimension(:), allocatable	mod_biology::frac_exbac_n
real(r8), dimension(:), allocatable	mod_biology::i_bac_ceff
real(r8), dimension(nbands)	mod_biology::wavedp
real(r8), dimension(ndom)	mod_biology::adoc410
real(r8), dimension(ndom)	mod_biology::adoc300