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Standard Input Script - behavior_oyster.in
The behavior_oyster.in file provides the initial locations …"

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<div class="title">Standard Input Script - behavior_oyster.in</div>

The behavior_oyster.in file provides the initial locations of the float trajectories to compute. The name of this file is set by the FBIONAM keyword in the [[floats.in]] file. This standard input ASCII file is organized in several sections as shown below, with links to more detailed explanation where required.

{{note}} '''Notice:''' Detailed information about ROMS input script file syntax can be found [[Input Parameter Files|here]].

{{note}} '''Notice:''' A default behavior_oyster.in input script is provided in the '''User/External''' subdirectory.

__TOC__

==Introduction==

Biological floats behavior parameters based on the oyster model of Dekshenicks ''et al.'' ([[Bibliography#DekshenicksM_1993a|1993]], [[Bibliography#DekshenicksM_1996a|1996]]):

:<div class="box">d(Lsize)/d(t) = growth(food,Lsize) * Gfactor(T,S) * turb_ef w_bio = TS * SW - (1 - TS) * SR</div>

where

:<div class="box"> turbef = m * trub + c for turbidity < 0.1 g/l '''or''' turbef = b * EXP(-beta*(turb-turb0)) for turbidity > 0.1 g/l TS = c * DS + d for increasing salinity gradient DS '''or''' TS = -e * DS + f for decreasing salinity gradient DS SR = 2.665 * EXP(0.0058*(Lsize-220)) '''Lsize:''' larval size in terms of length (um) '''TS:''' fraction of active larvae: fractional swimming time '''SW:''' larval swimming rate (mm/s) '''SR:''' larval sinking rate (mm/s) '''DS:''' salinity change rate (1/s) '''w_bio:''' larval vertica migration</div>

==Initialization Parameters==

*Initial planktonic larvae size in terms of length (um).
:<div class="box"> [[Variables#Larvae_size0|Larvae_size0]] == 50.0d0</div>

*Initial planktonic larvae growth rate (um/day).
:<div class="box"> [[Variables#Larvae_GR0|Larvae_GR0]] == 12.5d0</div>

*Planktonic larvae settlement size (um).
:<div class="box"> [[Variables#settle_size|settle_size]] == 330.0d0</div>

*Initial food supply (constant source) concentration (mg Carbon/l).
:<div class="box"> [[Variables#food_supply|food_supply]] == 4.0d0</div>

==Turbidity Effect Parameters on Planktonic Larvae Growth==

Following the [[Bibliography#DekshenieksM_1997a|Dekshenieks ''et al.'' (1997)]] definition for the turbidity effect (linear or exponential) as described above.

:<div class="box"> [[Variables#turb_ambi|turb_ambi]] == 0.0d0 ! ambient turbidity level, {turb}, (g/l) [[Variables#turb_crit|turb_crit]] == 0.1d0 ! critical turbidity value (g/l) [[Variables#turb_slop|turb_slop]] == 0.5d0 ! turbidity linear slope, {m}, (1/(g/l)) [[Variables#turb_axis|turb_axis]] == 1.0d0 ! turbidity linear axis crossing {c} [[Variables#turb_base|turb_base]] == 0.375d0 ! turbidity base factor, {b}, (g/l) [[Variables#turb_rate|turb_rate]] == 0.5d0 ! turbidity rate, {beta}, (1/(g/l)) [[Variables#turb_mean|turb_mean]] == 2.0d0 ! turbidity mean, {turb0}, (g/l) [[Variables#turb_size|turb_size]] == 75.0d0 ! minimum larvae size (um) affected by tubidity</div>

==Planktonic Larvae Vertical Migration (Swimming) Parameters==

It is assumed larvae swimming speeds are much smaller than horizontal currents, so only vertical migration is considered since vertical currents are relatively small in comparison. Following the [[Bibliography#DekshenieksM_1997a|Dekshenieks ''et al.'' (1997)]] definition for vertical migration and behavior as described above.

:<div class="box"> [[Variables#swim_Tmin|swim_Tmin]] == 0.64d0 ! minimum swimming time fraction [[Variables#swim_Tmax|swim_Tmax]] == 0.83d0 ! maximum swimming time fraction [[Variables#swim_Sinc|swim_Sinc]] == 0.3801d0 ! fraction active {d} due to increasing salinity [[Variables#swim_Sdec|swim_Sdec]] == 0.7515d0 ! fraction active {f} due to decreasing salinity [[Variables#slope_Sinc|slope_Sinc]] == 0.0622d0 ! coefficient {c} due to increasing salinity [[Variables#slope_Sdec|slope_Sdec]] == 0.0668d0 ! coefficient {d} due to decreasing salinity</div>

==Planktonic larvae sinking parameters==

Following the [[Bibliography#DekshenieksM_1997a|Dekshenieks ''et al.'' (1997)]] definition for the larval sinking rate (mm/s), as a function of larval size (um) as described above.

:<div class="box"> [[Variables#sink_base|sink_base]] == 2.665d0 ! larval sinking exponential factor (mm/s) [[Variables#sink_rate|sink_rate]] == 0.0058d0 ! sinking exponential rate factor (1/um) [[Variables#sink_size|sink_size]] == 220.0d0 ! larval size (um) for mean exponential sinking</div>

==Planktonic Larvae Swimming Speed==

Planktonic larvae swimming speed (mm/s) as a function of larval size (um) and temperature (Celsius), look-up table ([[Bibliography#DekshenieksM_1996a|Dekshenieks ''et al.'', 1996]]; oyster larvae).

:<div class="box"> [[Variables#swim_Im|swim_Im]] = 58 ! number of values in larval size I-axix [[Variables#swim_Jm|swim_Jm]] = 24 ! number of values in temperature J-axis [[Variables#swim_L0|swim_L0]] = 55.0d0 ! starting value for temperature I-axis [[Variables#swim_T0|swim_T0]] = 12.0d0 ! starting value for larval size J-axis [[Variables#swim_DL|swim_DL]] = 5.0d0 ! larval size J-axis increment [[Variables#swim_DT|swim_DT]] = 1.0d0 ! temperature I-axis increment [[Variables#swim_table|swim_table]] = larval swimming speed look table, swim_table(58,24) 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.03 0.04 0.06 0.07 0.07 0.08 0.08 0.09 0.09 0.10 0.10 0.09 0.09 0.09 0.09 0.09 0.08 0.08 0.08 0.08 0.09 0.09 0.09 0.09 0.09 0.10 0.10 0.10 0.10 0.11 0.11 0.11 0.12 0.12 0.13 0.14 0.14 0.15 0.16 0.16 0.17 0.18 0.19 0.19 0.20 0.21 0.21 0.22 0.22 0.22 0.22 0.22 0.22 0.22 0.22 0.22 0.00 0.03 0.06 0.09 0.12 0.13 0.14 0.15 0.17 0.18 0.19 0.20 0.20 0.19 0.19 0.19 0.18 0.18 0.17 0.17 0.17 0.18 0.18 0.18 0.19 0.19 0.19 0.20 0.20 0.21 0.21 0.21 0.22 0.22 0.23 0.25 0.26 0.28 0.29 0.30 0.32 0.33 0.34 0.36 0.37 0.38 0.40 0.41 0.43 0.44 0.44 0.44 0.44 0.44 0.44 0.44 0.44 0.44 0.00 0.05 0.09 0.14 0.18 0.20 0.21 0.23 0.25 0.27 0.28 0.30 0.29 0.29 0.28 0.28 0.27 0.26 0.26 0.25 0.26 0.26 0.27 0.27 0.28 0.28 0.29 0.30 0.30 0.31 0.31 0.32 0.32 0.33 0.35 0.37 0.39 0.41 0.43 0.45 0.47 0.50 0.52 0.54 0.56 0.58 0.60 0.62 0.64 0.66 0.66 0.66 0.66 0.66 0.66 0.66 0.66 0.66 0.00 0.05 0.09 0.14 0.19 0.21 0.22 0.24 0.26 0.28 0.29 0.31 0.31 0.30 0.30 0.29 0.28 0.28 0.28 0.27 0.28 0.28 0.29 0.30 0.30 0.31 0.31 0.32 0.33 0.33 0.34 0.35 0.35 0.36 0.38 0.40 0.42 0.44 0.46 0.48 0.50 0.52 0.55 0.57 0.59 0.61 0.63 0.65 0.67 0.69 0.69 0.69 0.69 0.69 0.69 0.69 0.69 0.69 0.00 0.05 0.09 0.14 0.19 0.21 0.22 0.24 0.26 0.28 0.29 0.31 0.31 0.31 0.30 0.30 0.30 0.29 0.29 0.29 0.30 0.31 0.31 0.32 0.33 0.34 0.34 0.35 0.36 0.37 0.38 0.38 0.39 0.40 0.42 0.44 0.46 0.48 0.50 0.52 0.54 0.56 0.59 0.61 0.63 0.65 0.67 0.69 0.71 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.00 0.05 0.10 0.15 0.20 0.22 0.23 0.25 0.27 0.29 0.30 0.32 0.32 0.32 0.32 0.31 0.31 0.31 0.31 0.31 0.32 0.33 0.34 0.34 0.35 0.36 0.37 0.38 0.39 0.40 0.40 0.41 0.42 0.43 0.45 0.47 0.49 0.51 0.53 0.55 0.57 0.60 0.62 0.64 0.66 0.68 0.70 0.72 0.74 0.76 0.76 0.76 0.76 0.76 0.76 0.76 0.76 0.76 0.00 0.05 0.10 0.16 0.21 0.23 0.24 0.26 0.27 0.29 0.30 0.32 0.32 0.32 0.32 0.32 0.33 0.33 0.33 0.33 0.34 0.35 0.36 0.37 0.38 0.39 0.40 0.41 0.42 0.43 0.44 0.45 0.46 0.47 0.49 0.51 0.53 0.55 0.57 0.59 0.61 0.63 0.66 0.68 0.70 0.72 0.74 0.76 0.78 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.80 0.00 0.05 0.11 0.16 0.22 0.24 0.25 0.27 0.28 0.30 0.31 0.33 0.33 0.34 0.34 0.34 0.34 0.34 0.35 0.35 0.36 0.37 0.38 0.39 0.40 0.41 0.43 0.44 0.45 0.46 0.47 0.48 0.49 0.50 0.52 0.54 0.56 0.58 0.60 0.62 0.64 0.66 0.69 0.71 0.73 0.75 0.77 0.79 0.81 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.00 0.06 0.12 0.18 0.24 0.27 0.29 0.32 0.35 0.38 0.40 0.43 0.43 0.44 0.44 0.44 0.44 0.44 0.45 0.45 0.46 0.46 0.47 0.47 0.48 0.48 0.49 0.50 0.50 0.51 0.51 0.52 0.52 0.53 0.55 0.57 0.59 0.61 0.63 0.65 0.67 0.69 0.72 0.74 0.76 0.78 0.80 0.82 0.84 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.86 0.00 0.06 0.13 0.19 0.26 0.30 0.34 0.38 0.41 0.45 0.49 0.53 0.53 0.53 0.53 0.53 0.54 0.54 0.54 0.54 0.54 0.54 0.54 0.55 0.55 0.55 0.55 0.55 0.55 0.55 0.56 0.56 0.56 0.56 0.58 0.60 0.62 0.64 0.67 0.69 0.71 0.73 0.75 0.77 0.79 0.81 0.84 0.86 0.88 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.00 0.07 0.14 0.21 0.28 0.33 0.38 0.43 0.48 0.53 0.58 0.63 0.63 0.63 0.63 0.63 0.64 0.64 0.64 0.64 0.64 0.63 0.63 0.63 0.63 0.62 0.62 0.62 0.61 0.61 0.61 0.61 0.60 0.60 0.62 0.64 0.66 0.68 0.70 0.72 0.74 0.76 0.79 0.81 0.83 0.85 0.87 0.89 0.91 0.93 0.93 0.93 0.93 0.93 0.93 0.93 0.93 0.93 0.00 0.08 0.16 0.23 0.31 0.37 0.43 0.49 0.55 0.61 0.67 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.73 0.72 0.72 0.71 0.70 0.69 0.69 0.68 0.67 0.67 0.66 0.65 0.64 0.64 0.63 0.65 0.67 0.69 0.72 0.74 0.76 0.78 0.80 0.82 0.84 0.86 0.88 0.91 0.93 0.95 0.97 0.97 0.97 0.97 0.97 0.97 0.97 0.97 0.97 0.00 0.08 0.17 0.25 0.33 0.40 0.47 0.54 0.62 0.69 0.76 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.83 0.82 0.81 0.79 0.78 0.77 0.76 0.75 0.73 0.72 0.71 0.70 0.68 0.67 0.66 0.68 0.70 0.72 0.75 0.77 0.79 0.81 0.83 0.85 0.87 0.89 0.92 0.94 0.96 0.98 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.00 0.09 0.18 0.27 0.36 0.43 0.51 0.59 0.67 0.75 0.83 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.90 0.89 0.88 0.86 0.85 0.84 0.83 0.81 0.79 0.78 0.77 0.76 0.74 0.73 0.72 0.74 0.76 0.78 0.81 0.84 0.86 0.88 0.90 0.92 0.94 0.97 1.00 1.02 1.04 1.06 1.09 1.09 1.09 1.09 1.09 1.09 1.09 1.09 1.09 0.00 0.10 0.19 0.29 0.39 0.47 0.55 0.64 0.73 0.81 0.90 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.97 0.96 0.93 0.92 0.91 0.90 0.88 0.86 0.85 0.84 0.83 0.80 0.79 0.78 0.80 0.83 0.85 0.88 0.91 0.93 0.96 0.98 1.00 1.03 1.05 1.09 1.11 1.13 1.16 1.18 1.18 1.18 1.18 1.18 1.18 1.18 1.18 1.18 0.00 0.10 0.21 0.31 0.42 0.51 0.60 0.69 0.79 0.88 0.97 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.06 1.05 1.04 1.01 1.00 0.99 0.97 0.96 0.94 0.92 0.91 0.90 0.87 0.86 0.85 0.87 0.90 0.92 0.96 0.99 1.01 1.04 1.06 1.09 1.11 1.14 1.18 1.20 1.23 1.26 1.28 1.28 1.28 1.28 1.28 1.28 1.28 1.28 1.28 0.00 0.12 0.23 0.34 0.46 0.56 0.65 0.75 0.86 0.96 1.06 1.15 1.15 1.15 1.15 1.15 1.15 1.15 1.15 1.15 1.14 1.13 1.10 1.09 1.07 1.06 1.04 1.02 1.00 0.99 0.97 0.95 0.93 0.92 0.95 0.97 1.00 1.04 1.07 1.10 1.13 1.15 1.18 1.21 1.24 1.28 1.31 1.34 1.36 1.39 1.39 1.39 1.39 1.39 1.39 1.39 1.39 1.39 0.00 0.12 0.25 0.38 0.50 0.60 0.71 0.82 0.94 1.04 1.15 1.25 1.25 1.25 1.25 1.25 1.25 1.25 1.25 1.25 1.24 1.22 1.19 1.18 1.16 1.15 1.13 1.10 1.09 1.07 1.06 1.03 1.01 1.00 1.03 1.06 1.09 1.13 1.16 1.19 1.22 1.25 1.28 1.31 1.35 1.39 1.42 1.45 1.48 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 1.51 0.00 0.14 0.27 0.41 0.54 0.66 0.77 0.89 1.02 1.13 1.25 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.36 1.35 1.33 1.30 1.28 1.26 1.25 1.23 1.20 1.18 1.17 1.15 1.12 1.10 1.08 1.12 1.15 1.18 1.23 1.26 1.30 1.33 1.36 1.40 1.43 1.46 1.51 1.54 1.58 1.61 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 1.64 0.00 0.15 0.29 0.44 0.59 0.71 0.84 0.96 1.11 1.23 1.35 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.48 1.46 1.44 1.41 1.39 1.37 1.35 1.34 1.30 1.28 1.27 1.25 1.21 1.19 1.18 1.21 1.25 1.28 1.34 1.37 1.41 1.44 1.48 1.52 1.55 1.59 1.64 1.68 1.71 1.75 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 1.78 0.00 0.16 0.32 0.48 0.64 0.77 0.91 1.05 1.20 1.34 1.47 1.61 1.61 1.61 1.61 1.61 1.61 1.61 1.61 1.61 1.59 1.57 1.53 1.51 1.49 1.47 1.45 1.41 1.39 1.37 1.36 1.32 1.30 1.28 1.32 1.36 1.39 1.45 1.49 1.53 1.57 1.61 1.65 1.68 1.72 1.78 1.82 1.86 1.90 1.94 1.94 1.94 1.94 1.94 1.94 1.94 1.94 1.94 0.00 0.17 0.34 0.52 0.69 0.84 0.99 1.14 1.30 1.45 1.60 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.72 1.70 1.66 1.64 1.62 1.60 1.58 1.54 1.51 1.49 1.47 1.43 1.41 1.39 1.43 1.47 1.51 1.58 1.62 1.66 1.70 1.75 1.79 1.83 1.87 1.93 1.98 2.02 2.06 2.10 2.10 2.10 2.10 2.10 2.10 2.10 2.10 2.10 0.00 0.19 0.38 0.56 0.75 0.91 1.07 1.23 1.42 1.58 1.74 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.90 1.87 1.85 1.80 1.78 1.76 1.74 1.71 1.67 1.64 1.62 1.60 1.55 1.53 1.51 1.55 1.60 1.64 1.71 1.76 1.80 1.85 1.90 1.94 1.99 2.03 2.10 2.15 2.19 2.24 2.28 2.28 2.28 2.28 2.28 2.28 2.28 2.28 2.28</div>

==Planktonic Larvae Growth Rate Factor==

Planktonic larvae growth rate factor (nondimensional) as a function salinity and temperature, look-up table (Dekshenieks ''et al.'', [[Bibliography#DekshenieksM_1996a|1996]], [[Bibliography#DekshenieksM_1997a|1997]]; oyster larvae).

:<div class="box"> [[Variables#Gfactor_Im|Gfactor_Im]] = 15 ! number of values in salinity I-axis [[Variables#Gfactor_Jm|Gfactor_Jm]] = 24 ! number of values in temperature J-axis [[Variables#Gfactor_S0|Gfactor_S0]] = 0.0d0 ! starting value for salinity I-axis [[Variables#Gfactor_T0|Gfactor_T0]] = 12.0d0 ! starting value for temperature J-axis [[Variables#Gfactor_DS|Gfactor_DS]] = 2.5d0 ! salinity I-axis increment [[Variables#Gfactor_DT|Gfactor_DT]] = 1.0d0 ! temperature J-axis increment [[Variables#Gfactor_table|Gfactor_table]] = larval growth rate factor look table, Gfactor(15,24) 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.16 0.17 0.18 0.19 0.19 0.19 0.19 0.18 0.18 0.18 0.18 0.00 0.00 0.00 0.31 0.33 0.35 0.37 0.37 0.39 0.39 0.37 0.37 0.37 0.37 0.37 0.00 0.00 0.00 0.47 0.49 0.52 0.55 0.56 0.58 0.58 0.56 0.55 0.55 0.55 0.55 0.00 0.00 0.00 0.48 0.51 0.55 0.59 0.60 0.61 0.61 0.59 0.59 0.59 0.59 0.59 0.00 0.00 0.00 0.48 0.53 0.57 0.62 0.63 0.64 0.63 0.62 0.62 0.62 0.62 0.62 0.00 0.00 0.00 0.49 0.55 0.60 0.66 0.68 0.69 0.68 0.67 0.67 0.67 0.67 0.67 0.00 0.00 0.00 0.49 0.57 0.63 0.70 0.72 0.73 0.73 0.72 0.72 0.72 0.72 0.72 0.00 0.00 0.00 0.49 0.59 0.65 0.75 0.77 0.78 0.77 0.77 0.77 0.77 0.77 0.77 0.00 0.00 0.00 0.49 0.61 0.68 0.79 0.81 0.83 0.82 0.81 0.82 0.82 0.82 0.82 0.00 0.00 0.00 0.49 0.63 0.70 0.83 0.86 0.87 0.87 0.86 0.87 0.87 0.87 0.87 0.00 0.00 0.00 0.49 0.65 0.73 0.87 0.90 0.92 0.92 0.91 0.92 0.92 0.92 0.92 0.00 0.00 0.00 0.49 0.67 0.76 0.91 0.95 0.97 0.96 0.95 0.97 0.97 0.97 0.97 0.00 0.00 0.00 0.49 0.69 0.78 0.95 0.99 1.01 1.01 1.00 1.02 1.02 1.02 1.02 0.00 0.00 0.00 0.49 0.71 0.81 0.99 1.04 1.06 1.06 1.05 1.07 1.07 1.07 1.07 0.00 0.00 0.00 0.49 0.73 0.83 1.04 1.08 1.11 1.10 1.09 1.11 1.11 1.11 1.11 0.00 0.00 0.00 0.49 0.75 0.86 1.08 1.13 1.15 1.15 1.14 1.16 1.16 1.16 1.16 0.00 0.00 0.00 0.49 0.77 0.88 1.12 1.18 1.20 1.20 1.19 1.21 1.21 1.21 1.21 0.00 0.00 0.00 0.49 0.77 0.88 1.12 1.18 1.20 1.20 1.19 1.21 1.21 1.21 1.21 0.00 0.00 0.00 0.49 0.77 0.88 1.12 1.18 1.20 1.20 1.19 1.21 1.21 1.21 1.21 0.00 0.00 0.00 0.49 0.77 0.88 1.12 1.18 1.20 1.20 1.19 1.21 1.21 1.21 1.21 </div>

==Planktonic Larvae Growth Rate==

Planktonic larvae growth rate (um/day) as a function of food supply (mg Carbon
/l) and larval size (um), look-up table (Dekshenieks ''et al.'', [[Bibliography#DekshenieksM_1996a|1996]], [[Bibliography#DekshenieksM_1997a|1997]]; oyster larvae).

:<div class="box"> [[Variables#Grate_Im|Grate_Im]] = 31 ! number of values in food supply I-axis [[Variables#Grate_Jm|Grate_Jm]] = 52 ! number of values in larval size J-axis [[Variables#Grate_F0|Grate_F0]] = 0.0d0 ! starting value for food supply I-axis [[Variables#Grate_L0|Grate_L0]] = 75.0d0 ! starting value for larval size J-axis [[Variables#Grate_DF|Grate_DF]] = 0.2d0 ! food supply I-axis increment [[Variables#Grate_DL|Grate_DL]] = 5.0d0 ! larval size J-axis increment [[Variables#Grate_table|Grate_table]] = larval growth rate look table, Grate(31,52) 0.95 3.28 5.71 7.31 7.56 7.45 7.11 6.75 6.45 6.27 6.09 5.24 4.21 3.44 2.92 2.41 1.89 1.37 0.85 0.52 0.46 0.40 0.34 0.28 0.22 0.16 0.10 0.04 0.00 0.00 0.00 0.02 2.51 4.99 6.30 6.28 7.03 7.71 8.37 8.60 8.02 7.44 7.08 6.78 6.40 5.95 5.51 5.07 4.62 4.18 3.74 3.30 2.87 2.44 2.01 1.56 1.13 0.70 0.27 0.00 0.00 0.00 0.00 2.36 4.71 6.12 6.46 7.44 8.68 9.94 10.48 10.17 9.85 9.68 9.55 9.37 9.14 8.93 8.57 8.16 7.74 7.32 6.90 6.49 6.07 5.66 5.24 4.82 4.41 3.99 3.71 3.65 3.59 0.00 2.22 4.44 5.95 6.67 7.87 9.66 11.51 12.36 12.31 12.27 12.29 12.33 12.34 12.34 12.35 12.08 11.69 11.30 10.91 10.52 10.13 9.74 9.35 8.96 8.56 8.18 7.79 7.50 7.38 7.25 0.00 2.08 4.17 5.79 6.88 8.30 10.64 13.08 14.24 14.46 14.69 14.90 15.11 15.31 15.54 15.77 15.59 15.23 14.86 14.50 14.14 13.77 13.41 13.04 12.68 12.31 11.95 11.59 11.29 11.11 10.91 0.00 1.95 3.90 5.62 7.09 8.73 11.62 14.65 16.11 16.61 17.12 17.52 17.89 18.29 18.74 19.20 19.10 18.77 18.42 18.09 17.75 17.41 17.08 16.73 16.40 16.05 15.72 15.39 15.08 14.83 14.57 0.00 1.81 3.63 5.44 7.25 9.07 12.44 15.99 17.72 18.49 19.27 19.86 20.42 21.01 21.67 22.34 22.32 22.02 21.70 21.39 21.09 20.77 20.46 20.15 19.84 19.53 19.22 18.91 18.61 18.30 17.98 0.00 1.69 3.38 5.07 6.75 8.45 11.45 14.60 16.28 17.24 18.21 19.11 19.99 20.83 21.52 22.22 22.24 21.98 21.71 21.44 21.18 20.91 20.65 20.38 20.11 19.84 19.58 19.32 19.05 18.79 18.51 0.00 1.56 3.13 4.69 6.25 7.82 10.46 13.22 14.84 15.99 17.16 18.35 19.56 20.65 21.37 22.09 22.15 21.94 21.71 21.49 21.28 21.05 20.83 20.61 20.39 20.16 19.94 19.72 19.50 19.28 19.05 0.00 1.44 2.88 4.32 5.75 7.20 9.47 11.83 13.40 14.75 16.10 17.60 19.13 20.47 21.22 21.97 22.07 21.90 21.72 21.54 21.37 21.19 21.01 20.84 20.66 20.48 20.30 20.13 19.95 19.77 19.58 0.00 1.31 2.63 3.94 5.26 6.58 8.48 10.44 11.95 13.50 15.05 16.84 18.70 20.29 21.06 21.85 21.98 21.86 21.73 21.59 21.46 21.33 21.20 21.07 20.93 20.80 20.67 20.53 20.40 20.26 20.11 0.00 1.19 2.38 3.57 4.76 5.95 7.49 9.06 10.51 12.25 14.00 16.09 18.27 20.11 20.91 21.72 21.90 21.82 21.73 21.64 21.56 21.47 21.38 21.29 21.20 21.12 21.03 20.94 20.84 20.75 20.64 0.00 1.06 2.13 3.20 4.26 5.33 6.50 7.67 9.07 11.00 12.94 15.34 17.84 19.93 20.76 21.60 21.82 21.78 21.74 21.69 21.65 21.61 21.56 21.52 21.48 21.44 21.39 21.34 21.29 21.23 21.18 0.11 1.12 2.13 3.14 4.15 5.17 6.17 7.18 8.52 10.44 12.36 14.74 17.23 19.31 20.18 21.06 21.30 21.29 21.28 21.26 21.26 21.22 21.16 21.11 21.05 21.00 20.94 20.89 20.83 20.77 20.71 0.29 1.30 2.31 3.31 4.32 5.33 6.33 7.34 8.61 10.37 12.13 14.26 16.48 18.37 19.29 20.20 20.47 20.48 20.49 20.49 20.51 20.45 20.34 20.23 20.12 20.02 19.91 19.82 19.72 19.61 19.51 0.48 1.48 2.49 3.49 4.49 5.49 6.50 7.50 8.71 10.30 11.89 13.77 15.73 17.43 18.39 19.35 19.65 19.67 19.69 19.73 19.76 19.68 19.52 19.36 19.19 19.04 18.88 18.74 18.60 18.46 18.31 0.66 1.66 2.67 3.66 4.66 5.66 6.66 7.66 8.81 10.23 11.65 13.29 14.98 16.49 17.50 18.50 18.82 18.86 18.90 18.96 19.01 18.91 18.70 18.48 18.26 18.05 17.85 17.67 17.48 17.30 17.12 0.85 1.84 2.84 3.83 4.83 5.82 6.82 7.81 8.90 10.15 11.41 12.80 14.23 15.55 16.60 17.64 17.99 18.04 18.11 18.19 18.26 18.14 17.87 17.60 17.34 17.07 16.82 16.60 16.37 16.14 15.92 1.03 2.03 3.02 4.00 4.99 5.99 6.98 7.97 9.00 10.08 11.18 12.32 13.48 14.61 15.71 16.79 17.16 17.23 17.31 17.42 17.51 17.37 17.05 16.72 16.41 16.09 15.79 15.53 15.25 14.99 14.72 1.18 2.15 3.13 4.09 5.06 6.03 7.01 7.98 8.95 9.91 10.89 11.85 12.83 13.83 14.93 16.01 16.42 16.53 16.65 16.75 16.84 16.72 16.45 16.18 15.91 15.65 15.37 15.10 14.82 14.55 14.28 1.27 2.19 3.12 4.04 4.96 5.89 6.81 7.74 8.66 9.58 10.51 11.42 12.36 13.31 14.34 15.36 15.81 16.02 16.21 16.25 16.28 16.27 16.23 16.17 16.13 16.08 15.94 15.73 15.50 15.28 15.06 1.35 2.23 3.11 3.98 4.86 5.74 6.62 7.50 8.38 9.25 10.13 10.98 11.89 12.79 13.75 14.71 15.21 15.51 15.77 15.75 15.72 15.83 16.00 16.17 16.35 16.52 16.52 16.35 16.18 16.01 15.84 1.44 2.27 3.10 3.93 4.77 5.60 6.43 7.26 8.09 8.92 9.75 10.54 11.42 12.27 13.16 14.05 14.60 14.99 15.32 15.25 15.17 15.38 15.78 16.16 16.56 16.96 17.10 16.98 16.86 16.74 16.62 1.52 2.31 3.10 3.88 4.67 5.45 6.23 7.02 7.81 8.59 9.38 10.11 10.95 11.75 12.57 13.40 13.99 14.48 14.88 14.75 14.61 14.93 15.55 16.16 16.78 17.40 17.67 17.61 17.54 17.47 17.40 1.61 2.35 3.09 3.83 4.57 5.31 6.04 6.78 7.52 8.26 9.00 9.67 10.48 11.22 11.99 12.75 13.39 13.97 14.44 14.25 14.05 14.48 15.32 16.16 17.00 17.84 18.25 18.23 18.22 18.20 18.19 1.69 2.39 3.08 3.77 4.47 5.16 5.85 6.54 7.23 7.93 8.62 9.23 10.01 10.70 11.40 12.09 12.78 13.45 14.00 13.75 13.49 14.04 15.10 16.15 17.21 18.27 18.82 18.86 18.90 18.93 18.97 1.56 2.26 2.97 3.67 4.38 5.09 5.78 6.49 7.19 7.90 8.61 9.24 10.02 10.72 11.43 12.14 12.84 13.54 14.12 13.96 13.80 14.37 15.44 16.49 17.55 18.62 19.18 19.25 19.32 19.39 19.46 1.40 2.12 2.85 3.57 4.29 5.02 5.73 6.45 7.18 7.90 8.62 9.28 10.07 10.79 11.52 12.24 12.96 13.68 14.29 14.23 14.17 14.78 15.83 16.86 17.91 18.95 19.52 19.62 19.72 19.82 19.92 1.25 1.99 2.73 3.47 4.21 4.95 5.68 6.42 7.16 7.90 8.64 9.32 10.12 10.86 11.60 12.34 13.08 13.82 14.45 14.51 14.55 15.19 16.22 17.23 18.26 19.29 19.86 19.99 20.12 20.25 20.38 1.09 1.85 2.61 3.36 4.12 4.88 5.63 6.39 7.15 7.90 8.66 9.37 10.17 10.93 11.69 12.45 13.20 13.96 14.62 14.78 14.93 15.60 16.61 17.60 18.61 19.62 20.21 20.36 20.52 20.68 20.84 0.93 1.71 2.49 3.26 4.03 4.81 5.58 6.35 7.13 7.90 8.68 9.41 10.23 11.00 11.78 12.55 13.32 14.09 14.79 15.05 15.31 16.00 16.99 17.97 18.96 19.95 20.55 20.73 20.92 21.11 21.31 0.78 1.57 2.36 3.16 3.94 4.74 5.53 6.32 7.11 7.91 8.69 9.45 10.28 11.07 11.87 12.66 13.45 14.23 14.96 15.33 15.68 16.41 17.38 18.35 19.32 20.29 20.89 21.11 21.32 21.54 21.77 0.62 1.43 2.24 3.05 3.86 4.67 5.48 6.29 7.10 7.91 8.71 9.49 10.33 11.14 11.95 12.76 13.57 14.37 15.13 15.60 16.06 16.82 17.77 18.72 19.67 20.62 21.23 21.48 21.73 21.97 22.23 0.47 1.29 2.12 2.95 3.77 4.60 5.42 6.25 7.08 7.91 8.73 9.53 10.38 11.21 12.04 12.87 13.69 14.51 15.30 15.87 16.44 17.23 18.16 19.09 20.02 20.96 21.57 21.85 22.13 22.41 22.69 0.31 1.16 2.00 2.85 3.68 4.53 5.37 6.22 7.06 7.91 8.75 9.58 10.44 11.28 12.13 12.97 13.81 14.65 15.47 16.14 16.82 17.63 18.55 19.46 20.37 21.29 21.91 22.22 22.53 22.84 23.16 0.16 1.02 1.88 2.74 3.60 4.46 5.32 6.18 7.05 7.91 8.76 9.62 10.49 11.35 12.21 13.08 13.93 14.79 15.64 16.42 17.19 18.04 18.94 19.83 20.73 21.63 22.25 22.59 22.93 23.27 23.62 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08 0.00 0.88 1.76 2.64 3.51 4.39 5.27 6.15 7.03 7.91 8.78 9.66 10.54 11.42 12.30 13.18 14.05 14.93 15.81 16.69 17.57 18.45 19.33 20.20 21.08 21.96 22.59 22.96 23.33 23.70 24.08</div>

← Older revision		Revision as of 17:50, 17 May 2012
Line 14:		Line 14:
	==Introduction==		==Introduction==

	Biological floats behavior parameters based on the oyster model of ~~Dekshenicks~~ ''et al.'' ([[Bibliography#~~DekshenicksM_1993a~~\|1993]], [[Bibliography#~~DekshenicksM_1996a~~\|1996]]):		Biological floats behavior parameters based on the oyster model of Dekshenieks ''et al.'' ([[Bibliography#DekshenieksM_1993a\|1993]], [[Bibliography#DekshenieksM_1996a\|1996]]):

	:<div class="box">d(Lsize)/d(t) = growth(food,Lsize) * Gfactor(T,S) * turb_ef<br /><br />w_bio = TS * SW - (1 - TS) * SR</div>		:<div class="box">d(Lsize)/d(t) = growth(food,Lsize) * Gfactor(T,S) * turb_ef<br /><br />w_bio = TS * SW - (1 - TS) * SR</div>

behavior oyster.in - Revision history

Robertson at 15:03, 18 May 2012

Robertson at 17:50, 17 May 2012

Robertson: Created page with "
Standard Input Script - behavior_oyster.in
The behavior_oyster.in file provides the initial locations …"

behavior oyster.in - Revision history

Robertson at 15:03, 18 May 2012

Robertson at 17:50, 17 May 2012

Robertson: Created page with "Standard Input Script - behavior_oyster.in The behavior_oyster.in file provides the initial locations …"

Robertson: Created page with "
Standard Input Script - behavior_oyster.in
The behavior_oyster.in file provides the initial locations …"