TOMS Bibliography
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Papers:
  1. Authors: Allen, S.E., M.S. Dinniman, J.M. Klinck, B.M. Hickey, D.D. Gorby, A.J. Hewett
    Date: 2003
    Title: On vertical advection truncation errors in terrain following numerical models: Comparison to a laboratory model for upwelling over submarine canyons
    Journal: Journal of Geophysical Research
    Volume: 108    Issue: C1    Pages: 3003
    Status: Published
    PDF Link: PDF

  2. Authors: Arango, H.G., A.M. Moore, A.J. Miller, B.D. Cornuelle, E.Di Lorenzo, and D.J. Neilson
    Date: 2004
    Title: The ROMS Tangent Linear and Adjoint Models: A comprehensive ocean prediction and analysis system
    PDF Link: PDF

  3. Authors: Broquet, Grégoire, Andrew M. Moore, Hernan G. Arango, Christopher A. Edwards and Brian S. Powell
    Date: 2009
    Title: Ocean State and Surface Forcing Correction using the ROMS-IS4DVAR Data Assimilation System
    Journal: Mercator Ocean Quarterly Newsletter
    Issue: 34    Pages: 5-13
    Status: Published
    PDF Link: PDF

  4. Authors: Capet, X., J. C. McWilliams, M.J. Molemaker, and A.F. Shchepetkin
    Date: 2008
    Title: Mesoscale to Submesoscale Transition in the California Current System. Part I: Flow Structure, Eddy Flux, and Observational Tests
    Journal: Journal of Physical Oceanography (JPO)
    Volume: 38    Issue: 1    Pages: 29-43
    Status: Published
    PDF Link: PDF

  5. Authors: Capet, X., J. C. McWilliams, M.J. Molemaker, and A.F. Shchepetkin
    Date: 2008
    Title: Mesoscale to Submesoscale Transition in the California Current System. Part II: Frontal Processes
    Journal: Journal of Physical Oceanography (JPO)
    Volume: 38    Issue: 1    Pages: 44-64
    Status: Published
    PDF Link: PDF

  6. Authors: Chassignet, E.P., H.G. Arango, D. Dietrich, T. Ezer, M. Ghil, D.B. Haidvogel C.-C. Ma, A. Mehra, A.M. Paiva, Z. Sirkes
    Date: 2000
    Title: DAMEE-NAB: The Base Experiments
    Journal: Dynamics of Atmospheres and Oceans
    Volume: 32    Issue: 3-4    Pages: 155-183
    Status: Published
    PDF Link: PDF

  7. Authors: Di Lorenzo, E., J. Fiechter, N. Schneider, A. Bracco, A. J. Miller, P. J. S. Franks, S. J. Bograd, A. M. Moore, A. C. Thomas, W. Crawford, A. Peña, and A. J. Hermann
    Date: 2009
    Title: Nutrient and Salinity Low-Frequency Variations in the central and eastern North Pacific
    Journal: Geophysical Research Letters
    Volume: 36    Issue: 14    Pages: L14601
    Status: Published
    PDF Link: PDF

  8. Authors: Di Lorenzo, E., N. Schneider, K. M. Cobb, P. J. S. Franks, K. Chhak, A. J. Miller, J. C. McWilliams, S. J. Bograd, H. Arango, E. Curchitser, T. M. Powell, P. Rivière
    Date: 2008
    Title: North Pacific Gyre Oscillation links ocean climate and ecosystem change
    Journal: Geophysical Research Letters
    Volume: 35    Issue: L8    Pages: L08607
    Status: Published
    PDF Link: PDF

  9. Authors: Di Lorenzo, Emanuele, Andrew M. Moore, Hernan G. Arango, Bruce D. Cornuelle, Arthur J. Miller, Brian Powell, Boon S. Chua, Andrew F. Bennett
    Date: 2007
    Title: Weak and strong constraint data assimilation in the inverse Regional Ocean Modeling System (ROMS): Development and application for a baroclinic coastal upwelling system
    Journal: Ocean Modelling
    Volume: 16    Issue: 3-4    Pages: 160-187
    Status: Published
    PDF Link: PDF

  10. Authors: Dinniman, M.S. and J.M. Klinck
    Date: 2002
    Title: The influence of open versus periodic alongshore boundaries on circulations near submarine canyons
    Journal: Journal of Atmospheric and Oceanic Technology (JTECH)
    Volume: 19    Issue: 10    Pages: 1722-1737
    Status: Published
    PDF Link: PDF

  11. Authors: Dinniman, M.S. and J.M. Klinck
    Date: 2004
    Title: A model study of circulation and cross shelf exchange on the west Antarctic Peninsula continental shelf
    Journal: Deep-Sea Research Part II: Topical Studies in Oceanography
    Volume: 51    Issue: 17-19    Pages: 2003-2022
    Status: Published
    PDF Link: PDF

  12. Authors: Dinniman, M.S., J.M. Klinck and W.O. Smith, Jr.
    Date: 2003
    Title: Cross shelf exchange in a model of the Ross Sea circulation and biogeochemistry
    Journal: Deep-Sea Research Part II: Topical Studies in Oceanography
    Volume: 50    Issue: 22-26    Pages: 3103-3120
    Status: Published
    PDF Link: PDF

  13. Authors: Durski, S.M., S.M. Glenn, D.B. Haidvogel
    Date: 2004
    Title: Vertical mixing schemes in the coastal ocean: Comparison of the Level 2.5 Mellor-Yamada scheme with an enhanced version of the K-profile parameterization
    Journal: Journal of Geophysical Research
    Volume: 109    Issue: C1    Pages: C01015
    Status: Published
    PDF Link: PDF

  14. Authors: Dutour Sikiric, Mathieu, Ivica Janekovic, and Milivoj Kuzmic
    Date: 2009
    Title: A new approach to bathymetry smoothing in sigma-coordinate ocean models
    Journal: Ocean Modelling
    Volume: 29    Issue: 2    Pages: 128-136
    Status: Published
    PDF Link: PDF

  15. Authors: Ezer, T., H.G. Arango and A.F. Shchepetkin
    Date: 2002
    Title: Developments in terrain-following ocean models: intercomparisons of numerical aspects
    Journal: Ocean Modelling
    Volume: 4    Issue: 3-4    Pages: 249-267
    Status: Published
    PDF Link: PDF

  16. Authors: Fennel, K., J. Wilkin, J. Levin, J. Moisan, J. O'Reilly, and D. Haidvogel
    Date: 2006
    Title: Nitrogen cycling in the Middle Atlantic Bight: Results from a three-dimensional model and implications for the North Atlantic nitrogen budget
    Journal: Global Biogeochemical Cycles
    Volume: 20    Issue: GB3    Pages: GB3007
    Status: Published
    PDF Link: PDF

  17. Authors: Fennel, K., J. Wilkin, M. Previdi, R. Najjar
    Date: 2008
    Title: Denitrification effects on air-sea CO2 flux in the coastal ocean: Simulations for the Northwest North Atlantic
    Journal: Geophysical Research Letters
    Volume: 35    Pages: L24608
    Status: Published
    PDF Link: PDF

  18. Authors: Fiechter, J., A.M. Moore, C.A. Edwards, K.W. Bruland, E. Di Lorenzo, C.V.W. Lewis, T.M. Powell, E. Curchitser, and K. Hedstrom
    Date: 2009
    Title: Modeling iron limitation of primary production in the coastal Gulf of Alaska
    Journal: Deep-Sea Research Part II: Topical Studies in Oceanography
    Volume: 56    Issue: 24    Pages: 2503-2519
    Status: Published
    PDF Link: PDF

  19. Authors: Haidvogel, D.B., H. Arango, W.P. Budgell, B.D. Cornuelle, E. Curchitser, E. Di Lorenzo, K. Fennel, W.R. Geyer, A.J. Hermann, L. Lanerolle, J. Levin, J.C. McWilliams, A.J. Miller, A.M. Moore, T.M. Powell, A.F. Shchepetkin, C.R. Sherwood, R.P. Signell, J.C. Warner, J. Wilkin
    Date: 2008
    Title: Ocean forecasting in terrain-following coordinates: Formulation and skill assessment of the Regional Ocean Modeling System
    Journal: Journal of Computational Physics
    Volume: 227    Issue: 7    Pages: 3595-3624
    Status: Published
    PDF Link: PDF

  20. Authors: Haidvogel, D.B., H.G. Arango, K. Hedstrom, A. Beckmann, P. Malanotte-Rizzoli, and A.F. Shchepetkin
    Date: 2000
    Title: Model Evaluation Experiments in the North Atlantic Basin: Simulations in Nonlinear Terrain-Following Coordinates
    Journal: Dynamics of Atmospheres and Oceans
    Volume: 32    Issue: 3-4    Pages: 239-281
    Status: Published
    PDF Link: PDF

  21. Authors: Hermann, A. J., E. N. Curchitser, D. B. Haidvogel and E. L. Dobbins
    Date: 2009
    Title: A comparison of remote versus local influence of El Nino on the coastal circulation of the Northeast Pacific
    Journal: Deep-Sea Research Part II: Topical Studies in Oceanography
    Volume: 56    Issue: 24    Pages: 2427-2443
    Status: Published
    PDF Link: PDF

  22. Authors: Hermann, A.J., S. Hinckley, E. L. Dobbins, D. B. Haidvogel, N. A. Bond, C. Mordy, N. Kachel and P. J. Stabeno
    Date: 2009
    Title: Quantifying cross-shelf and vertical nutrient flux in the Gulf of Alaska with a spatially nested, coupled biophysical model
    Journal: Deep-Sea Research Part II: Topical Studies in Oceanography
    Volume: 56    Issue: 24    Pages: 2474-2486
    Status: Published
    PDF Link: PDF

  23. Authors: Hinckley, S., J.M. Napp, A.J. Hermann and C. Parada
    Date: 2009
    Title: Simulation of physically-mediated variability in prey resources for a larval fish - a 3-dimensional NPZ model
    Journal: Fisheries Oceanography
    Volume: 18    Issue: 4    Pages: 201-223
    Status: Published
    PDF Link: PDF

  24. Authors: Hinckley, S., K. O. Coyle, G. Gibson, A. J. Hermann, and E. L. Dobbins
    Date: 2009
    Title: A biophysical NPZ model with iron for the Gulf of Alaska: Reproducing the differences between an oceanic HNLC ecosystem and a classical northern temperate shelf ecosystem
    Journal: Deep-Sea Research Part II: Topical Studies in Oceanography
    Volume: 56    Issue: 24    Pages: 2520-2536
    Status: Published
    PDF Link: PDF

  25. Authors: Klinck, J.M., J. She, and B.M. Hickey
    Date: 2000
    Title: Flow near submarine canyons driven by transient winds
    Journal: Journal of Geophysical Research
    Status: Revised and re-submitted

  26. Authors: Kumar, Nirnimesh, George Voulgaris, John C. Warner, and Maitane Olabarrieta
    Date: 2012
    Title: Implementation of the vortex force formalism in the coupled ocean-atmosphere-wave-sediment transport (COAWST) modeling system for inner shelf and surf zone applications
    Journal: Ocean Modelling
    Volume: 47    Pages: 65-95
    Status: Published
    PDF Link: PDF

  27. Authors: Kösters, F., R. Käse, Kevin Fleming, and D. Wolf
    Date: 0000
    Title: Denmark Strait overflow for Last Glacial Maximum to Holocene conditions
    Volume: 19    Status: Published
    HTML Link: HTML

  28. Authors: Lutjeharms, J.R.E., P. Penven and C. Roy
    Date: 2002
    Title: Shear edge eddies of the southern Agulhas Current
    Journal: Continental Shelf Research
    Volume: 23    Issue: 11-13    Pages: 1099-1115
    Status: Published
    PDF Link: PDF

  29. Authors: MacCready, P. and W.R. Geyer,
    Date: 2001
    Title: Estuarine salt flux through an isohaline surface
    Journal: Journal of Geophysical Research
    Volume: 106    Issue: C6    Pages: 11629-11637
    Status: Published
    PDF Link: PDF

  30. Authors: Malanotte-Rizzoli, P., K. Hedstrom, H.G. Arango, and D.B. Haidvogel,
    Date: 2000
    Title: Water mass pathways between the subtropical and tropical ocean in a climatological simulation of the North Atlantic ocean circulation
    Journal: Dynamics of Atmospheres and Oceans
    Volume: 32    Issue: 3-4    Pages: 331-371
    Status: Published
    PDF Link: PDF

  31. Authors: Marchesiello, P., J.C. McWilliams, A.F. Shchepetkin
    Date: 2001
    Title: Open boundary conditions for long-term integration of regional ocean models
    Journal: Ocean Modelling
    Volume: 3    Issue: 1-2    Pages: 1-20
    Status: Published
    PDF Link: PDF

  32. Authors: Miller, Arthur J., Douglas J. Neilson, Douglas S. Luther, Myrl C. Hendershott, Bruce D. Cornuelle, Peter F. Worcester, Matthew A. Dzieciuch, Brian D. Dushaw, Bruce M. Howe, Julia C. Levin, Hernan G. Arango, and Dale B. Haidvogel
    Date: 2007
    Title: Barotropic Rossby wave radiation from a model Gulf Stream
    Journal: Geophysical Research Letters
    Volume: 34    Issue: L23    Pages: L23613
    Status: Published
    PDF Link: PDF

  33. Authors: Moore, A.M., H.G. Arango, A.J. Miller, B.D. Cornuelle, E. Di Lorenzo and D.J. Neilson
    Date: 2004
    Title: A Comprehensive Ocean Prediction and Analysis System Based on the Tangent Linear and Adjoint Components of a Regional Ocean Model
    Journal: Ocean Modelling
    Volume: 7    Issue: 1-2    Pages: 227-258
    Status: Published
    PDF Link: PDF

  34. Authors: Moore, A.M., H.G. Arango, G. Broquet, B.S. Powell, A.T. Weaver, and J. Zavala-Garay
    Date: 2011
    Title: The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilations systems, Part I - System overview and formulation
    Journal: Progress in Oceanography
    Volume: 91    Pages: 34-49
    Status: Published
    PDF Link: PDF

  35. Authors: Moore, A.M., H.G. Arango, G. Broquet, C. Edward, M. Veneziani, B. Powell, D. Foley, J.D. Doyle, D. Costa, and P. Robinson
    Date: 2011
    Title: The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilations systems, Part II – Performance and application to the California Current System
    Journal: Progress in Oceanography
    Volume: 91    Pages: 50-73
    Status: Published
    PDF Link: PDF

  36. Authors: Moore, A.M., H.G. Arango, G. Broquet, C. Edward, M. Veneziani, B. Powell, D. Foley, J.D. Doyle, D. Costa, and P. Robinson
    Date: 2011
    Title: The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilations systems, Part III - Observation impact and observation sensitivity in the California Current
    Journal: Progress in Oceanography
    Volume: 91    Pages: 74-94
    Status: Published
    PDF Link: PDF

  37. Authors: Peliz, A., J. Dubert, D. B. Haidvogel
    Date: 2003
    Title: Subinertial Response of a Density-Driven Eastern Boundary Poleward Current to Wind Forcing
    Journal: Journal of Physical Oceanography (JPO)
    Volume: 33    Issue: 8    Pages: 1633-1650
    Status: Published
    PDF Link: PDF

  38. Authors: Peliz, A., J. Dubert, D.B. Haidvogel, and B. Le Cann
    Date: 2003
    Title: Generation and unstable evolution of a density-driven Eastern Poleward Current: The Iberian Poleward Current
    Journal: Journal of Geophysical Research
    Volume: 108    Issue: C8    Pages: 3268
    Status: Published
    PDF Link: PDF

  39. Authors: Penven, P., C. Roy, A. Colin de Verdiere and J. Largier
    Date: 2000
    Title: Simulation and quantification of a coastal jet retention process using a barotropic model
    Journal: Oceanologica Acta
    Volume: 23    Issue: 5    Pages: 615-634
    Status: Published
    PDF Link: PDF

  40. Authors: Penven, P., C. Roy, J.R.E. Lutjeharms, A. Colin de Verdiere, A. Johnson, F. Shillington, P. Freon and G. Brundrit,
    Date: 2001
    Title: A regional hydrodynamic model of the Southern Benguela
    Journal: South African Journal of Science
    Volume: 97    Issue: 11 &12    Pages: 472-476
    Status: Published
    PDF Link: PDF

  41. Authors: Penven, P., J.R.E. Lutjeharms, P. Marchesiello, C. Roy and S.J. Weeks
    Date: 2001
    Title: Generation of cyclonic eddies by the Agulhas Current in the lee of the Agulhas Bank
    Journal: Geophysical Research Letters
    Volume: 28    Issue: 6    Pages: 1055-1058
    Status: Published
    PDF Link: PDF

  42. Authors: Robertson, Robin
    Date: 2006
    Title: Modeling internal tides over Fieberling Guyot: resolution, parameterization, performance
    Journal: Ocean Dynamics
    Volume: 56    Issue: 5-6    Pages: 430-444
    Status: Published
    PDF Link: PDF

  43. Authors: Shchepetkin, A.F. and J.C. McWilliams
    Date: 2005
    Title: The Regional Ocean Modeling System (ROMS): A split-explicit, free-surface, topography-following coordinates ocean model
    Journal: Ocean Modelling
    Volume: 9    Issue: 4    Pages: 347-404
    Status: Published
    PDF Link: PDF

  44. Authors: Shchepetkin, A.F. and J.C. McWilliams
    Date: 2003
    Title: A Method for Computing Horizontal Pressure-Gradient Force in an Oceanic Model with a Non-Aligned Vertical Coordinate
    Journal: Journal of Geophysical Research
    Volume: 108    Issue: C3    Pages: 3090
    Status: Published
    PDF Link: PDF

  45. Authors: She, J. and J.M. Klinck
    Date: 2000
    Title: Flow near submarine canyons driven by constant winds
    Journal: Journal of Geophysical Research
    Volume: 105    Issue: C12    Pages: 28671-28694
    Status: Published
    PDF Link: PDF

  46. Authors: Smith, W.O., Jr., M.S. Dinniman, J.M. Klinck and E.E. Hofmann
    Date: 2003
    Title: Biogeochemical Climatologies of the Ross Sea, Antarctica: Seasonal Patterns of Nutrients and Biomass
    Journal: Deep-Sea Research Part II: Topical Studies in Oceanography
    Volume: 50    Issue: 22-26    Pages: 3083-3101
    Status: Published
    PDF Link: PDF

  47. Authors: Warner, John C., Christopher R. Sherwood, Hernan G. Arango, Richard P. Signell
    Date: 2005
    Title: Performance of Four Turbulence Closure Methods Implemented Using a Generic Length Scale Method
    Journal: Ocean Modelling
    Volume: 8    Issue: 1-2    Pages: 81-113
    Status: Published
    PDF Link: PDF

  48. Authors: Warner, John C., Christopher R. Sherwood, Richard P. Signell, Courtney K. Harris, Hernan G. Arango
    Date: 2008
    Title: Development of a three-dimensional, regional, coupled wave, current, and sediment-transport model
    Journal: Computers & Geoscience
    Volume: 34    Issue: 10    Pages: 1284-1306
    Status: Published
    PDF Link: PDF

  49. Authors: Wilkin, J.L, H.G. Arango, D.B. Haidvogel, C.S. Lichtenwalner, S.M. Glenn, and K.S. Hedstrom
    Date: 2005
    Title: A Regional Ocean Modeling System for the Long-term Ecosystem Laboratory
    Journal: Journal of Geophysical Research
    Volume: 110    Issue: C6    Pages: C06S91
    Status: Published
    PDF Link: PDF

  50. Authors: Williams, W., T. Weingartner, and A. Hermann
    Date: 2009
    Title: Idealized 2-dimensional modeling of a coastal buoyancy front under downwelling-favourable wind-forcing with application to the Alaska Coastal Current
    Journal: Journal of Physical Oceanography (JPO)
    Status: Submitted

  51. Authors: Williams, W., T. Weingartner, and A. Hermann
    Date: 2007
    Title: Idealized Modeling of Seasonal Variation in the Alaska Coastal Current
    Journal: Journal of Geophysical Research
    Volume: 112    Issue: 7    Pages: C07001
    Status: Published
    PDF Link: PDF





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