problem in test case of upwelling

[xinwang]

hello, every one.

I am fresh man using ROMS, and met a problem.

I have installed ROMS in gaea, a system of noaa. The build.sh is changed as the tutorial(using netcdf-pgi-3.6.2). When running build.sh, there is an error. The following is the displaying after running build.sh. Thanks for your help.

rm -f -r core *.ipo /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build /ncrc/home2/Xin.Wang/make_macros.mk
makefile:238: INCLUDING FILE /ncrc/home2/Xin.Wang/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
which: no ifort in (/sw/xe6/globus/globus-5.2.1/bin:/sw/xe6/globus/globus-5.2.1/sbin:/opt/torque/default/bin:/opt/moab/default/bin:/opt/modules/3.2.6.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin)
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/netcdf.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/typesizes.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/ncrc/home2/Xin.Wang/roms_projects/upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /ncrc/home2/Xin.Wang/roms_projects/upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /ncrc/home2/Xin.Wang/roms_projects/upwelling -I Master -I Compilers --silent --moddir /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/output.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Functionals/analytical.F ROMS/Utility/abort.F ROMS/Utility/array_modes.F ROMS/Utility/back_cost.F ROMS/Utility/cgradient.F ROMS/Utility/checkadj.F ROMS/Utility/checkdefs.F ROMS/Utility/checkerror.F ROMS/Utility/checkvars.F ROMS/Utility/close_io.F ROMS/Utility/congrad.F ROMS/Utility/convolve.F ROMS/Utility/cost_grad.F ROMS/Utility/def_avg.F ROMS/Utility/def_diags.F ROMS/Utility/def_dim.F ROMS/Utility/def_error.F ROMS/Utility/def_floats.F ROMS/Utility/def_gst.F ROMS/Utility/def_hessian.F ROMS/Utility/def_his.F ROMS/Utility/def_impulse.F ROMS/Utility/def_info.F ROMS/Utility/def_ini.F ROMS/Utility/def_lanczos.F ROMS/Utility/def_mod.F ROMS/Utility/def_norm.F ROMS/Utility/def_rst.F ROMS/Utility/def_station.F ROMS/Utility/def_tides.F ROMS/Utility/def_var.F ROMS/Utility/distribute.F ROMS/Utility/dotproduct.F ROMS/Utility/erf.F ROMS/Utility/extract_obs.F ROMS/Utility/extract_sta.F ROMS/Utility/frc_weak.F ROMS/Utility/gasdev.F ROMS/Utility/get_2dfld.F ROMS/Utility/get_2dfldr.F ROMS/Utility/get_3dfld.F ROMS/Utility/get_3dfldr.F ROMS/Utility/get_bounds.F ROMS/Utility/get_cycle.F ROMS/Utility/get_date.F ROMS/Utility/get_grid.F ROMS/Utility/get_gst.F ROMS/Utility/get_ngfld.F ROMS/Utility/get_ngfldr.F ROMS/Utility/get_state.F ROMS/Utility/get_varcoords.F ROMS/Utility/grid_coords.F ROMS/Utility/ini_adjust.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/ini_lanczos.F ROMS/Utility/inp_par.F ROMS/Utility/inquire.F ROMS/Utility/interpolate.F ROMS/Utility/lbc.F ROMS/Utility/lubksb.F ROMS/Utility/ludcmp.F ROMS/Utility/metrics.F ROMS/Utility/mp_exchange.F ROMS/Utility/mp_routines.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/nf_fread2d.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/nf_fread3d.F ROMS/Utility/nf_fread4d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/normalization.F ROMS/Utility/nrutil.F ROMS/Utility/obs_cost.F ROMS/Utility/obs_depth.F ROMS/Utility/obs_initial.F ROMS/Utility/obs_read.F ROMS/Utility/obs_write.F ROMS/Utility/packing.F ROMS/Utility/posterior.F ROMS/Utility/posterior_var.F ROMS/Utility/ran1.F ROMS/Utility/random_ic.F ROMS/Utility/ran_state.F ROMS/Utility/read_asspar.F ROMS/Utility/read_biopar.F ROMS/Utility/read_couplepar.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/read_fltpar.F ROMS/Utility/read_phypar.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_stapar.F ROMS/Utility/regrid.F ROMS/Utility/rep_matrix.F ROMS/Utility/set_2dfld.F ROMS/Utility/set_2dfldr.F ROMS/Utility/set_3dfld.F ROMS/Utility/set_3dfldr.F ROMS/Utility/set_diags.F ROMS/Utility/set_masks.F ROMS/Utility/set_ngfld.F ROMS/Utility/set_ngfldr.F ROMS/Utility/set_scoord.F ROMS/Utility/set_weights.F ROMS/Utility/shapiro.F ROMS/Utility/sqlq.F ROMS/Utility/state_addition.F ROMS/Utility/state_copy.F ROMS/Utility/state_dotprod.F ROMS/Utility/state_initialize.F ROMS/Utility/state_product.F ROMS/Utility/state_scale.F ROMS/Utility/stats_modobs.F ROMS/Utility/stiffness.F ROMS/Utility/strings.F ROMS/Utility/sum_grad.F ROMS/Utility/timers.F ROMS/Utility/uv_rotate.F ROMS/Utility/vorticity.F ROMS/Utility/white_noise.F ROMS/Utility/wpoints.F ROMS/Utility/wrt_avg.F ROMS/Utility/wrt_diags.F ROMS/Utility/wrt_error.F ROMS/Utility/wrt_floats.F ROMS/Utility/wrt_gst.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_his.F ROMS/Utility/wrt_impulse.F ROMS/Utility/wrt_info.F ROMS/Utility/wrt_ini.F ROMS/Utility/wrt_rst.F ROMS/Utility/wrt_station.F ROMS/Utility/wrt_tides.F ROMS/Utility/zeta_balance.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_average.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_mixing.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_param.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_tides.F Master/esmf_roms.F Master/master.F Master/ocean_control.F Master/ocean_coupler.F Master/propagator.F Master/roms_export.F Master/roms_import.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/MakeDepend
cp -p /ncrc/home2/Xin.Wang/make_macros.mk /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
makefile:234: INCLUDING FILE /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
which: no ifort in (/sw/xe6/globus/globus-5.2.1/bin:/sw/xe6/globus/globus-5.2.1/sbin:/opt/torque/default/bin:/opt/moab/default/bin:/opt/modules/3.2.6.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin)
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/abort.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/abort.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/abort.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' Master/ocean_control.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/ocean_control.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/ocean_control.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Functionals/analytical.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/analytical.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/analytical.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/distribute.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/distribute.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/distribute.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_iounits.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_iounits.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_iounits.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_param.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_param.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_param.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_kinds.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_kinds.f90
/bin/sh: -c: command not found
make: *** [/ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.o] Error 127

[l_fr]

Well it seems that the compiler is ill-defined. At this place:
; -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_kinds.f90
There should be the compiler (ifort, gfortran, pgi) before the -c. Check in your build.bash script that the compiler is well defined.

Cheers,

François

[xinwang]

Thanks to François for your suggestion. I will check the compiler.

[kate]

Code: Select all

which: no ifort in (/sw/xe6/globus/globus-5.2.1/bin:/sw/xe6/globus/globus-5.2.1/sbin:/opt/torque/default/bin:/opt/moab/default/bin:/opt/modules/3.2.6.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/bin:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin)
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/netcdf.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build

It is looking for ifort, which it would have gotten from the FORT variable. On the other hand, you are copying over the pgi netcdf module files. This has to be consistent - use the module files built by the compiler you use to build ROMS.

[xinwang]

Thank you, Kate.
I input the following commands: "module load intel/12.0.5.220" and "module load netcdf/3.6.2a" . But there is still an error listing in the following. I have no idea how use the module files built to build ROMS. Am I wrong in setting netcdf? Can you tell me more details? Many thanks!

roms_projects/upwelling> ./build.sh
rm -f -r core *.ipo /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build /ncrc/home2/Xin.Wang/make_macros.mk
makefile:238: INCLUDING FILE /ncrc/home2/Xin.Wang/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/netcdf.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
cp -f /opt/cray/netcdf/3.6.2/netcdf-pgi/include/typesizes.mod /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
./ROMS/Bin/sfmakedepend --cpp --fext=f90 --file=- --objdir=/ncrc/home2/Xin.Wang/roms_projects/upwelling/Build -DROMS_HEADER="upwelling.h" -I ROMS/Include -I /ncrc/home2/Xin.Wang/roms_projects/upwelling -I ROMS/Nonlinear -I ROMS/Nonlinear/Biology -I ROMS/Nonlinear/Sediment -I ROMS/Utility -I ROMS/Drivers -I ROMS/Functionals -I /ncrc/home2/Xin.Wang/roms_projects/upwelling -I Master -I Compilers --silent --moddir /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build ROMS/Nonlinear/bbl.F ROMS/Nonlinear/bc_2d.F ROMS/Nonlinear/bc_3d.F ROMS/Nonlinear/bc_bry2d.F ROMS/Nonlinear/bc_bry3d.F ROMS/Nonlinear/bulk_flux.F ROMS/Nonlinear/bvf_mix.F ROMS/Nonlinear/conv_2d.F ROMS/Nonlinear/conv_3d.F ROMS/Nonlinear/conv_bry2d.F ROMS/Nonlinear/conv_bry3d.F ROMS/Nonlinear/diag.F ROMS/Nonlinear/exchange_2d.F ROMS/Nonlinear/exchange_3d.F ROMS/Nonlinear/forcing.F ROMS/Nonlinear/frc_adjust.F ROMS/Nonlinear/get_data.F ROMS/Nonlinear/get_idata.F ROMS/Nonlinear/gls_corstep.F ROMS/Nonlinear/gls_prestep.F ROMS/Nonlinear/hmixing.F ROMS/Nonlinear/ini_fields.F ROMS/Nonlinear/initial.F ROMS/Nonlinear/interp_floats.F ROMS/Nonlinear/lmd_bkpp.F ROMS/Nonlinear/lmd_skpp.F ROMS/Nonlinear/lmd_swfrac.F ROMS/Nonlinear/lmd_vmix.F ROMS/Nonlinear/main2d.F ROMS/Nonlinear/main3d.F ROMS/Nonlinear/mpdata_adiff.F ROMS/Nonlinear/my25_corstep.F ROMS/Nonlinear/my25_prestep.F ROMS/Nonlinear/obc_adjust.F ROMS/Nonlinear/obc_volcons.F ROMS/Nonlinear/omega.F ROMS/Nonlinear/output.F ROMS/Nonlinear/pre_step3d.F ROMS/Nonlinear/prsgrd.F ROMS/Nonlinear/radiation_stress.F ROMS/Nonlinear/rho_eos.F ROMS/Nonlinear/rhs3d.F ROMS/Nonlinear/set_avg.F ROMS/Nonlinear/set_data.F ROMS/Nonlinear/set_depth.F ROMS/Nonlinear/set_massflux.F ROMS/Nonlinear/set_tides.F ROMS/Nonlinear/set_vbc.F ROMS/Nonlinear/set_zeta.F ROMS/Nonlinear/step2d.F ROMS/Nonlinear/step3d_t.F ROMS/Nonlinear/step3d_uv.F ROMS/Nonlinear/step_floats.F ROMS/Nonlinear/t3dbc_im.F ROMS/Nonlinear/t3dmix.F ROMS/Nonlinear/tkebc_im.F ROMS/Nonlinear/u2dbc_im.F ROMS/Nonlinear/u3dbc_im.F ROMS/Nonlinear/uv3dmix.F ROMS/Nonlinear/v2dbc_im.F ROMS/Nonlinear/v3dbc_im.F ROMS/Nonlinear/vwalk_floats.F ROMS/Nonlinear/wetdry.F ROMS/Nonlinear/wvelocity.F ROMS/Nonlinear/zetabc.F ROMS/Nonlinear/Biology/biology.F ROMS/Nonlinear/Biology/biology_floats.F ROMS/Nonlinear/Sediment/sed_bed.F ROMS/Nonlinear/Sediment/sed_bedload.F ROMS/Nonlinear/Sediment/sed_fluxes.F ROMS/Nonlinear/Sediment/sediment.F ROMS/Nonlinear/Sediment/sed_settling.F ROMS/Nonlinear/Sediment/sed_surface.F ROMS/Functionals/analytical.F ROMS/Utility/abort.F ROMS/Utility/array_modes.F ROMS/Utility/back_cost.F ROMS/Utility/cgradient.F ROMS/Utility/checkadj.F ROMS/Utility/checkdefs.F ROMS/Utility/checkerror.F ROMS/Utility/checkvars.F ROMS/Utility/close_io.F ROMS/Utility/congrad.F ROMS/Utility/convolve.F ROMS/Utility/cost_grad.F ROMS/Utility/def_avg.F ROMS/Utility/def_diags.F ROMS/Utility/def_dim.F ROMS/Utility/def_error.F ROMS/Utility/def_floats.F ROMS/Utility/def_gst.F ROMS/Utility/def_hessian.F ROMS/Utility/def_his.F ROMS/Utility/def_impulse.F ROMS/Utility/def_info.F ROMS/Utility/def_ini.F ROMS/Utility/def_lanczos.F ROMS/Utility/def_mod.F ROMS/Utility/def_norm.F ROMS/Utility/def_rst.F ROMS/Utility/def_station.F ROMS/Utility/def_tides.F ROMS/Utility/def_var.F ROMS/Utility/distribute.F ROMS/Utility/dotproduct.F ROMS/Utility/erf.F ROMS/Utility/extract_obs.F ROMS/Utility/extract_sta.F ROMS/Utility/frc_weak.F ROMS/Utility/gasdev.F ROMS/Utility/get_2dfld.F ROMS/Utility/get_2dfldr.F ROMS/Utility/get_3dfld.F ROMS/Utility/get_3dfldr.F ROMS/Utility/get_bounds.F ROMS/Utility/get_cycle.F ROMS/Utility/get_date.F ROMS/Utility/get_grid.F ROMS/Utility/get_gst.F ROMS/Utility/get_ngfld.F ROMS/Utility/get_ngfldr.F ROMS/Utility/get_state.F ROMS/Utility/get_varcoords.F ROMS/Utility/grid_coords.F ROMS/Utility/ini_adjust.F ROMS/Utility/ini_hmixcoef.F ROMS/Utility/ini_lanczos.F ROMS/Utility/inp_par.F ROMS/Utility/inquire.F ROMS/Utility/interpolate.F ROMS/Utility/lbc.F ROMS/Utility/lubksb.F ROMS/Utility/ludcmp.F ROMS/Utility/metrics.F ROMS/Utility/mp_exchange.F ROMS/Utility/mp_routines.F ROMS/Utility/nf_fread2d_bry.F ROMS/Utility/nf_fread2d.F ROMS/Utility/nf_fread3d_bry.F ROMS/Utility/nf_fread3d.F ROMS/Utility/nf_fread4d.F ROMS/Utility/nf_fwrite2d_bry.F ROMS/Utility/nf_fwrite2d.F ROMS/Utility/nf_fwrite3d_bry.F ROMS/Utility/nf_fwrite3d.F ROMS/Utility/nf_fwrite4d.F ROMS/Utility/normalization.F ROMS/Utility/nrutil.F ROMS/Utility/obs_cost.F ROMS/Utility/obs_depth.F ROMS/Utility/obs_initial.F ROMS/Utility/obs_read.F ROMS/Utility/obs_write.F ROMS/Utility/packing.F ROMS/Utility/posterior.F ROMS/Utility/posterior_var.F ROMS/Utility/ran1.F ROMS/Utility/random_ic.F ROMS/Utility/ran_state.F ROMS/Utility/read_asspar.F ROMS/Utility/read_biopar.F ROMS/Utility/read_couplepar.F ROMS/Utility/read_fltbiopar.F ROMS/Utility/read_fltpar.F ROMS/Utility/read_phypar.F ROMS/Utility/read_sedpar.F ROMS/Utility/read_stapar.F ROMS/Utility/regrid.F ROMS/Utility/rep_matrix.F ROMS/Utility/set_2dfld.F ROMS/Utility/set_2dfldr.F ROMS/Utility/set_3dfld.F ROMS/Utility/set_3dfldr.F ROMS/Utility/set_diags.F ROMS/Utility/set_masks.F ROMS/Utility/set_ngfld.F ROMS/Utility/set_ngfldr.F ROMS/Utility/set_scoord.F ROMS/Utility/set_weights.F ROMS/Utility/shapiro.F ROMS/Utility/sqlq.F ROMS/Utility/state_addition.F ROMS/Utility/state_copy.F ROMS/Utility/state_dotprod.F ROMS/Utility/state_initialize.F ROMS/Utility/state_product.F ROMS/Utility/state_scale.F ROMS/Utility/stats_modobs.F ROMS/Utility/stiffness.F ROMS/Utility/strings.F ROMS/Utility/sum_grad.F ROMS/Utility/timers.F ROMS/Utility/uv_rotate.F ROMS/Utility/vorticity.F ROMS/Utility/white_noise.F ROMS/Utility/wpoints.F ROMS/Utility/wrt_avg.F ROMS/Utility/wrt_diags.F ROMS/Utility/wrt_error.F ROMS/Utility/wrt_floats.F ROMS/Utility/wrt_gst.F ROMS/Utility/wrt_hessian.F ROMS/Utility/wrt_his.F ROMS/Utility/wrt_impulse.F ROMS/Utility/wrt_info.F ROMS/Utility/wrt_ini.F ROMS/Utility/wrt_rst.F ROMS/Utility/wrt_station.F ROMS/Utility/wrt_tides.F ROMS/Utility/zeta_balance.F ROMS/Modules/mod_arrays.F ROMS/Modules/mod_average.F ROMS/Modules/mod_bbl.F ROMS/Modules/mod_behavior.F ROMS/Modules/mod_biology.F ROMS/Modules/mod_boundary.F ROMS/Modules/mod_clima.F ROMS/Modules/mod_coupler.F ROMS/Modules/mod_coupling.F ROMS/Modules/mod_diags.F ROMS/Modules/mod_eclight.F ROMS/Modules/mod_eoscoef.F ROMS/Modules/mod_floats.F ROMS/Modules/mod_forces.F ROMS/Modules/mod_fourdvar.F ROMS/Modules/mod_grid.F ROMS/Modules/mod_iounits.F ROMS/Modules/mod_kinds.F ROMS/Modules/mod_mixing.F ROMS/Modules/mod_ncparam.F ROMS/Modules/mod_nesting.F ROMS/Modules/mod_netcdf.F ROMS/Modules/mod_ocean.F ROMS/Modules/mod_parallel.F ROMS/Modules/mod_param.F ROMS/Modules/mod_scalars.F ROMS/Modules/mod_sedbed.F ROMS/Modules/mod_sediment.F ROMS/Modules/mod_sources.F ROMS/Modules/mod_stepping.F ROMS/Modules/mod_storage.F ROMS/Modules/mod_strings.F ROMS/Modules/mod_tides.F Master/esmf_roms.F Master/master.F Master/ocean_control.F Master/ocean_coupler.F Master/propagator.F Master/roms_export.F Master/roms_import.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/MakeDepend
cp -p /ncrc/home2/Xin.Wang/make_macros.mk /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build
makefile:234: INCLUDING FILE /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/abort.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/abort.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/abort.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' Master/ocean_control.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/ocean_control.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/ocean_control.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Functionals/analytical.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/analytical.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/analytical.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/distribute.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/distribute.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/distribute.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_iounits.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_iounits.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_iounits.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_param.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_param.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_param.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_kinds.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_kinds.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_kinds.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_param.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_iounits.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_ncparam.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_ncparam.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_ncparam.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_biology.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_biology.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_biology.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_scalars.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_scalars.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_scalars.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_scalars.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_biology.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_parallel.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_parallel.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_parallel.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -DMY_OS='"Linux"' -DMY_CPU='"x86_64"' -DMY_FORT='"ifort"' -DMY_FC='"/opt/intel/composerxe-2011.5.220/bin/intel64/ifort"' -DMY_FFLAGS='"-heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free -free"' ROMS/Modules/mod_strings.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_strings.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_strings.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free -free mod_strings.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_parallel.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_sediment.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sediment.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sediment.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_sediment.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free -free mod_ncparam.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free distribute.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/erf.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/erf.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/erf.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free erf.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Nonlinear/exchange_2d.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/exchange_2d.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/exchange_2d.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free exchange_2d.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Nonlinear/exchange_3d.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/exchange_3d.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/exchange_3d.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free exchange_3d.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_boundary.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_boundary.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_boundary.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_boundary.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_clima.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_clima.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_clima.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_clima.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_eclight.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_eclight.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_eclight.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_eclight.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_forces.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_forces.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_forces.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_forces.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_grid.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_grid.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_grid.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_grid.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_mixing.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_mixing.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_mixing.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_mixing.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_ocean.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_ocean.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_ocean.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_ocean.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_sedbed.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sedbed.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sedbed.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_sedbed.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_sources.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sources.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_sources.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Modules/mod_netcdf.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_netcdf.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_netcdf.f90
/usr/bin/cpp -P -traditional -DLINUX -DX86_64 -DIFORT -D'ROOT_DIR="/autofs/na2_home2/Xin.Wang/roms/src"' -DUPWELLING -D'HEADER="upwelling.h"' -D'ROMS_HEADER="/ncrc/home2/Xin.Wang/roms_projects/upwelling/upwelling.h"' -DNestedGrids= -D'ANALYTICAL_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' -D'MY_ANALYTICAL="on"' -D'SVN_REV="625"' -IROMS/Include -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IROMS/Nonlinear -IROMS/Nonlinear/Biology -IROMS/Nonlinear/Sediment -IROMS/Utility -IROMS/Drivers -IROMS/Functionals -I/ncrc/home2/Xin.Wang/roms_projects/upwelling -IMaster -ICompilers -D'HEADER_DIR="/ncrc/home2/Xin.Wang/roms_projects/upwelling"' ROMS/Utility/strings.F > /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/strings.f90
ROMS/Bin/cpp_clean /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/strings.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free strings.f90
cd /ncrc/home2/Xin.Wang/roms_projects/upwelling/Build; /opt/intel/composerxe-2011.5.220/bin/intel64/ifort -c -heap-arrays -fp-model precise -g -check uninit -ftrapuv -traceback -free mod_netcdf.f90
mod_netcdf.f90(19): error #7013: This module file was not generated by any release of this compiler. [NETCDF]
USE netcdf
----------^
mod_netcdf.f90(109): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_REAL]
integer, parameter :: NF_FOUT = nf90_real
--------------------------------------^
mod_netcdf.f90(110): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_DOUBLE]
integer, parameter :: NF_FRST = nf90_double
--------------------------------------^
mod_netcdf.f90(111): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_DOUBLE]
integer, parameter :: NF_TYPE = nf90_double
--------------------------------------^
mod_netcdf.f90(117): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_64BIT_OFFSET]
integer :: CMODE = nf90_64bit_offset ! NetCDF 64-bit offset format
-------------------------^
mod_netcdf.f90(117): error #6973: This is not a valid initialization expression. [NF90_64BIT_OFFSET]
integer :: CMODE = nf90_64bit_offset ! NetCDF 64-bit offset format
-------------------------^
mod_netcdf.f90(109): error #6404: This name does not have a type, and must have an explicit type. [NF90_REAL]
integer, parameter :: NF_FOUT = nf90_real
--------------------------------------^
mod_netcdf.f90(110): error #6404: This name does not have a type, and must have an explicit type. [NF90_DOUBLE]
integer, parameter :: NF_FRST = nf90_double
--------------------------------------^
mod_netcdf.f90(117): error #6404: This name does not have a type, and must have an explicit type. [NF90_64BIT_OFFSET]
integer :: CMODE = nf90_64bit_offset ! NetCDF 64-bit offset format
-------------------------^
mod_netcdf.f90(212): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE]
status=nf90_inquire(ncid, n_dim, n_var, n_gatt, rec_id)
---------------^
mod_netcdf.f90(214): error #6404: This name does not have a type, and must have an explicit type. [NF90_NOERR]
IF ((status.eq.nf90_noerr).and.(n_dim.le.Mdims)) THEN
-----------------------^
mod_netcdf.f90(221): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_DIMENSION]
status=nf90_inquire_dimension(ncid, dim_id(i), &
-------------------^
mod_netcdf.f90(706): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE]
status=nf90_inquire(my_ncid, n_dim, n_var, n_gatt, rec_id)
---------------^
mod_netcdf.f90(715): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_VARIABLE]
status=nf90_inquire_variable(my_ncid, var_id(i), &
-------------------^
mod_netcdf.f90(721): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQ_ATTNAME]
status=nf90_inq_attname(my_ncid, var_id(i), j, &
-----------------------^
mod_netcdf.f90(809): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_DIMENSION]
status=nf90_inquire_dimension(my_ncid, var_Dids(i), &
---------------------^
mod_netcdf.f90(825): error #6632: Keyword arguments are invalid without an explicit interface. [XTYPE]
& xtype = my_Atype, &
------------------------------------------------^
mod_netcdf.f90(826): error #6632: Keyword arguments are invalid without an explicit interface. [LEN]
& len = my_Alen)
------------------------------------------------^
mod_netcdf.f90(823): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_ATTRIBUTE]
status=nf90_inquire_attribute(my_ncid, my_id, &
-------------------------^
mod_netcdf.f90(829): error #6404: This name does not have a type, and must have an explicit type. [NF90_INT]
& (my_Atype.eq.NF90_INT)) THEN
-------------------------------------^
mod_netcdf.f90(830): error #6404: This name does not have a type, and must have an explicit type. [NF90_GET_ATT]
status=nf90_get_att(my_ncid, my_id, &
-----------------------------^
mod_netcdf.f90(844): error #6404: This name does not have a type, and must have an explicit type. [NF90_FLOAT]
& ((my_Atype.eq.NF90_FLOAT ).or. &
-------------------------------------------^
mod_netcdf.f90(859): error #6404: This name does not have a type, and must have an explicit type. [NF90_CHAR]
ELSE IF (my_Atype.eq.NF90_CHAR) THEN
-----------------------------------------^
mod_netcdf.f90(982): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQ_VARID]
status=nf90_inq_varid(ncid, TRIM(myVarName), VarID)
---------------^
mod_netcdf.f90(1066): error #6632: Keyword arguments are invalid without an explicit interface. [NAME]
& name = my_Vname, &
-------------------------------------^
mod_netcdf.f90(1067): error #6632: Keyword arguments are invalid without an explicit interface. [NATTS]
& nAtts = my_natts)
-------------------------------------^
mod_netcdf.f90(1065): error #6404: This name does not have a type, and must have an explicit type. [NF90_INQUIRE_VARIABLE]
status=nf90_inquire_variable(my_ncid, varid, &
---------------^
mod_netcdf.f90(4515): catastrophic error: Too many errors, exiting
compilation aborted for mod_netcdf.f90 (code 1)
make: *** [/ncrc/home2/Xin.Wang/roms_projects/upwelling/Build/mod_netcdf.o] Error 1

[kate]

Code: Select all

mod_netcdf.f90(19): error #7013: This module file was not generated by any release of this compiler. [NETCDF]
USE netcdf
----------^

If there is a pgi module on that system, loading it and setting FORT to pgi might be simplest. If you believe that ifort is a better compiler, you can ask the system guys if they have built NetCDF with it and stashed that in a different module. A third option is to compile NetCDF with ifort yourself and use that version.

[xinwang]

Thanks to Kate for your kind and patient answers.
Now, ROMS can run successfully.

[peigen]

i have the same errors as yours. How can you solve it finally?

[kate]

Which errors? Are you getting this?

mod_netcdf.f90(19): error #7013: This module file was not generated by any release of this compiler. [NETCDF]
USE netcdf

You *must* use the same compiler (and same version) to build NetCDF and to build ROMS.