compiling ROMS

[rbauer]

hey there!
i tried to compile roms but i get the following error message:

makefile:237: INCLUDING FILE Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cd Build; -c -O3 mod_kinds.f90
/bin/sh: -c: not found
make: *** [Build/mod_kinds.o] Error 127

beforehand i had to change the path of netcdf within the Linux-g95.mk file.

i appreciate any help!
thanks a lot!

[kate]

It doesn't know what Fortran compiler to invoke. Are you telling it:

FORT ?= g95

then in the Linux-g95.mk file,

FC := g95

[rbauer]

thank you for your response, kate. well, as far as i've understood, there's a list of mk-files which relate to different compilers. i am running linux ubuntu 10.04 64bit and the gfortran compiler is installed. therefore i changed the path of netcdf within the Linux-gfortran.mk file too.
however, i am still getting the same response.
these are the settings within the default section of the Linux-gfortran.mk file:
# First the defaults
#
FC := gfortran
FFLAGS := -frepack-arrays
CPP := /usr/bin/cpp
CPPFLAGS := -P -traditional
LDFLAGS :=
AR := ar
ARFLAGS := -r
MKDIR := mkdir -p
RM := rm -f
RANLIB := ranlib
PERL := perl
TEST := test

MDEPFLAGS := --cpp --fext=f90 --file=- --objdir=$(SCRATCH_DIR)

#
# Library locations, can be overridden by environment variables.

again, thank you for your help!

[kate]

Well, you can try something like "make -p | grep FC" to see what it thinks FC is. I get:

Code: Select all

make -f makefile.UP -p | grep FC
FC := /usr/local/pkg/pgi/pgi-9.0.4/linux86-64/9.0-4/bin/pgf90

which reminds me of this little piece of Linux-pgi.mk:

Code: Select all

#
# Use full path of compiler.
#
               FC := $(shell which ${FC})
               LD := $(FC)

Is gfortran in your path?

[rbauer]

if i run"make -p | grep FC" i get this:

makefile:237: INCLUDING FILE Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
/bin/sh: -c: not found
make: *** [Build/mod_kinds.o] Error 127
PREPROCESS.F = $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F
LINK.r = $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH)
COMPILE.f = $(FC) $(FFLAGS) $(TARGET_ARCH) -c
COMPILE.F = $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c
PREPROCESS.r = $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F
cd $$(SCRATCH_DIR); $$(FC) -c $$(FFLAGS) $(notdir $2)
FC :=
F77 = $(FC)
COMPILE.r = $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c
LINK.F = $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH)
LINK.f = $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH)
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) $(notdir $<)
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) frc_weak.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_dim.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_impulse.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) oi_update.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) back_cost.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_impulse.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ini_hmixcoef.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) distribute.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_kinds.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) stats_modobs.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_nesting.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) zetabc.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) checkerror.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_ngfldr.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) sed_surface.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) bulk_flux.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_coupling.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fread3d_bry.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) shapiro.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_coupler.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) grid_coords.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) u3dbc_im.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) step3d_uv.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_stepping.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_hessian.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fwrite3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) cgradient.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) radiation_stress.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_ocean.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_mod.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_tides.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) main2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) interp_floats.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_2dfld.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_diags.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) frc_adjust.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) bc_bry2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) checkvars.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) sum_grad.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) pre_step3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_eclight.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mp_routines.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) conv_bry2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_parallel.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) metrics.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fread3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) gasdev.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) rep_matrix.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ludcmp.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_data.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wpoints.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) state_initialize.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_3dfld.f90
# CPPFLAGS += -DMY_OS='"$(OS)"' -DMY_CPU='"$(CPU)"' -DMY_FORT='"$(FORT)"' -DMY_FC='"$(FC)"' -DMY_FFLAGS='"$(FFLAGS)"'
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_zeta.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_sediment.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_diags.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) posterior.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) strings.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) bbl.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) stiffness.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) omega.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_mixing.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_fourdvar.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) hmixing.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ocean_coupler.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) prsgrd.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) congrad.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) output.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) packing.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_storage.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) regrid.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_strings.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) lmd_bkpp.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) tkebc_im.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) esmf_roms.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) gls_corstep.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_floats.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ran_state.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) close_io.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) extract_sta.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ran1.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) initial.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_3dfld.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_diags.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) sed_bedload.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_error.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) main3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wetdry.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) sed_bed.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) lmd_vmix.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) conv_2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_station.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_arrays.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_error.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mpdata_adiff.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) state_addition.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) random_ic.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_station.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) step_floats.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_biology.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_bbl.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_info.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_obs.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_hessian.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) rho_eos.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_tides.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_avg.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_3dfldr.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_ngfld.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_state.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_gst.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) obs_cost.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) t3dmix.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_ini.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_2dfld.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) sed_fluxes.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_param.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_gst.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_grid.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) obs_depth.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) lmd_skpp.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) sediment.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_ini.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_sedbed.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fwrite4d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) abort.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_clima.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_his.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_floats.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) interpolate.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_vbc.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) posterior_var.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) bc_bry3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_var.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_idata.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) exchange_2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) conv_bry3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) state_scale.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_his.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_floats.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_info.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) conv_3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) master.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_diags.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) white_noise.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) bc_2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) v2dbc_im.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) obc_volcons.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) obs_read.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) inp_par.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) roms_import.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fread4d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_boundary.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_forces.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) checkadj.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) biology.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) obc_adjust.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) my25_prestep.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_data.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) vwalk_floats.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_depth.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_bounds.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) sed_settling.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) state_dotprod.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_weights.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) step3d_t.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) cost_grad.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_tides.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_scalars.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) checkdefs.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) diag.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ocean_control.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) propagator.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) t3dbc_im.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) extract_obs.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_varcoords.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) step2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_lanczos.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) vorticity.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) lubksb.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) gls_prestep.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_gst.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_ngfldr.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_avg.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_tides.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_avg.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nrutil.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_sources.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wrt_rst.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mp_exchange.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ini_fields.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) rhs3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_average.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) analytical.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_massflux.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fwrite2d_bry.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_rst.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fread2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_cycle.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_2dfldr.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) uv3dmix.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) utility.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) array_modes.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) v3dbc_im.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) zeta_balance.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) exchange_3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) u2dbc_im.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) obs_write.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) state_product.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_scoord.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) def_norm.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) normalization.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) my25_corstep.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_3dfldr.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fread2d_bry.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) set_ngfld.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ini_lanczos.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_eoscoef.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_netcdf.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fwrite2d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_date.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_2dfldr.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_ncparam.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) forcing.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) state_copy.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) timers.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) obs_initial.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) wvelocity.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) ini_adjust.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) bc_3d.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) roms_export.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) get_grid.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) mod_iounits.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) dotproduct.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) bvf_mix.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) nf_fwrite3d_bry.f90
cd $(SCRATCH_DIR); $(FC) -c $(FFLAGS) lmd_swfrac.f90

it seems like i've do define the fortran compiler... . but where?

[kate]

Above, you show part of your Linux-gfortran.mk file. Below that in the same file, there should be:

Code: Select all

#
# Use full path of compiler.
#
               FC := $(shell which ${FC})
               LD := $(FC)

This sets FC to be not just gfortran but /some/long/path/to/gfortran assuming it is in your path. What do you get from:

Code: Select all

cygnus.arsc.edu 244% which gfortran
/usr/bin/gfortran

or

Code: Select all

be1005en% which gfortran
gfortran: Command not found.

If make isn't finding it, but you know it's there, you can always just tell it:

Code: Select all

               FC := /some/long/path/to/gfortran
               LD := $(FC)

Of course, put this after the one with "shell which".

[robertson]

Sometimes gfortran is not called gfortran, sometimes it's something like gfortran44 for gfortran version 4.4.x. You need to find out what gfortran is actually called on your machine and use that name when making the adjustment Kate mentioned.

[rbauer]

i specified the gfortran compiler within the makefile and its location as you recommended within the Linux-gfortran.mk file. so i guess i managed the fortran compiler issue.

however, i am still getting the following error message:

robert@bauer:~/ROMS/trunk$ make
makefile:237: INCLUDING FILE Build/make_macros.mk WHICH CONTAINS APPLICATION-DEPENDENT MAKE DEFINITIONS
cd Build; /usr/bin/gfortran -c -frepack-arrays -O3 -ffast-math bc_2d.f90
bc_2d.f90:100.18:

USE mod_grid
1
Fatal Error: Can't open module file 'mod_grid.mod' for reading at (1): No such file or directory
make: *** [Build/bc_2d.o] Error 1

i've put my makefile and Linux-gfortran.mk file on a server:

http://dl.dropbox.com/u/1777473/ROMS/Linux-gfortran.mk
http://dl.dropbox.com/u/1777473/ROMS/makefile

thanks!

[kate]

Now you are facing a dependency issue which should be fixed by Build/MakeDepend, one of the first things that gets built by the makefile. If you type:

Code: Select all

make clean

then

Code: Select all

make

what is the first big chunk of output? What does MakeDepend look like?

[cebalhos]

Hello!
I'm finding the same thing.
Someone managed to fix this error?
Thanks

[kate]

Exactly which error are you seeing? Have you read this entire thread carefully?