Ocean Modeling Discussion


Search for:
It is currently Sun Jul 21, 2019 6:56 am

Post new topic Reply to topic  [ 2 posts ] 

All times are UTC

Author Message
PostPosted: Fri Oct 12, 2018 8:27 pm 

Joined: Tue Sep 28, 2010 11:59 pm
Posts: 46
Location: Texas A&M University

I am having a strange error while running ROMS.
When I turn off USE_DEBUG in coawst.bash, the compile goes well, but I get the following error while ROMS tries to create a restart file.

          C => (i,j,k)       Cu            Cv            Cw         Max Speed

      0 14610 00:00:00  8.331972E-03  7.785941E+03  7.785949E+03  1.202318E+14
          (547,028,30)  4.212970E-02  5.095988E-02  0.000000E+00  1.303715E+00
      DEF_STATION - creating stations file, Grid 01: /scratch/user/d.kobashi/projects/hindcasts/projects/txla2/outputs/2010/ocean_sta.nc

DEF_VAR - unable to define variable: h
           in NetCDF file: /scratch/user/d.kobashi/projects/hindcasts/projects/txla2/outputs/2010/ocean_rst.nc

 Elapsed CPU time (seconds):

 Node   #  0 CPU:       5.184

 ROMS/TOMS - Output NetCDF summary for Grid 01:
             number of time records written in STATION file = 00000001

 Analytical header files used:


 ROMS/TOMS - Output error ............ exit_flag:   3

 Node   #  1 CPU:      68.800
 Node   #  2 CPU:      68.799
 Node   #  3 CPU:      68.799

 ERROR: Abnormal termination: NetCDF OUTPUT.
 REASON: NetCDF: Invalid dimension ID or name   

The error message indicates that the model cannot define h (bathymetry) while trying to create a restart file due to invalid dimension ID or name. Thus, the model failed to create restart file.

However, when I turn on USE_DEBUG, the model creates restart file without any errors. :shock:
I have never had this problem before.

It is strange because the error is nothing to do with computation (e.g. floating point error etc.).

I assume the difference between USE_DEBUG off and USE_DEBUG on is the optimization of the compiler.
I use intel fortran/intel mpi to run my model.

My FFLAGS without USE_DEBUG is
FFLAGS += -ip -O2

FFLAGS += -g -check uninit -ftrapuv -traceback

The following line is used by both
FFLAGS := -heap-arrays -fp-model fast -mt_mpi

The grid parameters are defined in def_info.F and it is nothing to do with debug mode. def_info.f90 in Build directory has the lines defining bathymetry, h, but the model execution did not pass def_var resulting in the error.

1245 !
1246 !  Bathymetry.
1247 !
1248         Vinfo( 1)='h'
1249         Vinfo( 2)='bathymetry at RHO-points'
1250         Vinfo( 3)='meter'
1251         Vinfo(14)='bath, scalar'
1252         Vinfo(22)='coordinates'
1253         Aval(5)=REAL(r2dvar,r8)
1254         IF (ncid.eq.STA(ng)%ncid) THEN
1255           status=def_var(ng, model, ncid, varid, NF_TYPE,               &
1256      &                   1, (/stadim/), Aval, Vinfo, ncname)
1257           IF (exit_flag.ne.NoError) RETURN
1258         ELSE
1259           status=def_var(ng, model, ncid, varid, NF_TYPE,               &
1260      &                   2, t2dgrd, Aval, Vinfo, ncname)
1261           IF (exit_flag.ne.NoError) RETURN
1262         END IF

What's the difference between USE_DEBUG=on and off aside from Fortran optimization in ROMS?

I've recently added additional variables to history files and that might be something to do with the error. Did the addition mess up netCDF id or name? The addition is to do with history file and is nothing to do with restart file, though.

I can still run the model with USE_DEBUG, but this issue is bugging me.
The model I use is COAWST and revision is 960.

Any suggestions and/or comments would be appreciated.

Thanks in advance.


Reply with quote  
PostPosted: Tue Oct 16, 2018 12:57 pm 

Joined: Wed Dec 31, 2003 6:16 pm
Posts: 786
Location: USGS, USA
not sure what is going on here. Can you try it without the changes that you added?

Reply with quote  
Display posts from previous:  Sort by  
Post new topic Reply to topic  [ 2 posts ] 

All times are UTC

Who is online

Users browsing this forum: No registered users and 2 guests

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum

Search for:
Jump to:  
Powered by phpBB® Forum Software © phpBB Group