Ocean Modeling Discussion

ROMS/TOMS

Search for:
It is currently Fri May 26, 2017 8:50 pm




Post new topic Reply to topic  [ 1 post ] 

All times are UTC

Author Message
PostPosted: Fri Mar 17, 2017 3:01 am 
Offline

Joined: Wed Dec 23, 2015 2:05 am
Posts: 1
Location: IIT Kharagpur
Hi,

I am trying to couple ROMS and SWAN with refinement grids. I have followed the steps for INLET_TEST/Refined. The ROMS and SWAN grid are formed using roms2swan and interpolation weights are obtained by modifying the file scrip_coawst_inlet_test_refined.in. I am getting segment number difference error in MCT. While running the SWAN only with refinement grids having same input files it works properly. The details of my error is shown below:

chirantan@chirantan-System-Product-Name:~/COAWST$ mpirun -np 8 ./coawstM Projects/BoB/coupling_inlet_test_ref3.in

Coupled Input File name = Projects/BoB/coupling_inlet_test_ref3.in Coupled Input File name = Projects/BoB/coupling_inlet_test_ref3.in

Model Coupling:

Ocean Model MPI nodes: 000 - 003

Waves Model MPI nodes: 004 - 007

Model Input Parameters: ROMS/TOMS version 3.7

Thursday - March 16, 2017 - 11:29:45 AM

-----------------------------------------------------------------------------

SWAN grid 1 is preparing computation

Bay of Bengal sediment transport with nesting

Operating system : Linux CPU/hardware : x86_64 Compiler system : gfortran Compiler command : /usr/bin/mpif90 Compiler flags : -frepack-arrays -O3 -ffast-math -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -frecord-marker=4 -fconvert=big-endian

Input Script :

SVN Root URL : https:://myroms.org/svn/src SVN Revision : Unversioned directory

Local Root : /home/omsairam/COAWST Header Dir : /home/omsairam/COAWST/Projects/BoB Header file : bob_refined.h Analytical Dir: /home/omsairam/COAWST/Projects/BoB

Resolution, Grid 01: 0287x0248x032, Parallel Nodes: 4, Tiling: 002x002

Physical Parameters, Grid: 01 =============================

16992 ntimes Number of timesteps for 3-D equations.

300.000 dt Timestep size (s) for 3-D equations.

30 ndtfast Number of timesteps for 2-D equations between

each 3D timestep.

1 ERstr Starting ensemble/perturbation run number. 1 ERend Ending ensemble/perturbation run number. 0 nrrec Number of restart records to read from disk. T LcycleRST Switch to recycle time-records in restart file.

288 nRST Number of timesteps between the writing of data

into restart fields.

1 ninfo Number of timesteps between print of information

to standard output.

T ldefout Switch to create a new output NetCDF file(s).

1728 nHIS Number of timesteps between the writing fields

into history file.

8766 ndefHIS Number of timesteps between creation of new

history files.

1.0000E-03 nl_visc2 NLM Horizontal, harmonic mixing coefficient

(m2/s) for momentum.

F LuvSponge? Turning OFF sponge on horizontal momentum. F LtracerSponge?(01) Turning OFF sponge on tracer 01: temp F LtracerSponge?(02) Turning OFF sponge on tracer 02: salt

5.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)

for tracer 01: temp

5.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)

for tracer 02: salt

5.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)

for momentum.

5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s)

for turbulent energy.

5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s)

for turbulent generic statistical field.

3.000 gls_p GLS stability exponent. 1.500 gls_m GLS turbulent kinetic energy exponent.

-1.000 gls_n GLS turbulent length scale exponent.

7.6000E-06 gls_Kmin GLS minimum value of turbulent kinetic energy. 1.0000E-12 gls_Pmin GLS minimum value of dissipation. 5.4770E-01 gls_cmu0 GLS stability coefficient. 1.4400E+00 gls_c1 GLS shear production coefficient. 1.9200E+00 gls_c2 GLS dissipation coefficient.

-4.0000E-01 gls_c3m GLS stable buoyancy production coefficient.

1.0000E+00 gls_c3p GLS unstable buoyancy production coefficient. 1.0000E+00 gls_sigk GLS constant Schmidt number for TKE. 1.3000E+00 gls_sigp GLS constant Schmidt number for PSI.

1400.000 charnok_alpha Charnok factor for Zos calculation.

0.500 zos_hsig_alpha Factor for Zos calculation using Hsig(Awave). 0.250 sz_alpha Factor for Wave dissipation surface tke flux .

100.000 crgban_cw Factor for Craig/Banner surface tke flux.

0.000 wec_alpha WEC factor for roller/breaking energy distribution.

3.0000E-04 rdrg Linear bottom drag coefficient (m/s). 2.5000E-02 rdrg2 Quadratic bottom drag coefficient. 1.5000E-02 Zob Bottom roughness (m). 5.0000E-01 Zos Surface roughness (m).

2 Vtransform S-coordinate transformation equation. 4 Vstretching S-coordinate stretching function.

7.0000E+00 theta_s S-coordinate surface control parameter. 2.0000E+00 theta_b S-coordinate bottom control parameter.

250.000 Tcline S-coordinate surface/bottom layer width (m) used

in vertical coordinate stretching.

1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.

1.000 dstart Time-stamp assigned to model initialization (days).

20040101.00 time_ref Reference time for units attribute (yyyymmdd.dd)

2.0000E+01 Tnudg(01) Nudging/relaxation time scale (days)

for tracer 01: temp

2.0000E+01 Tnudg(02) Nudging/relaxation time scale (days)

for tracer 02: salt

0.0000E+00 Tnudg_SSS Nudging/relaxation time scale (days)

for sea surface salinity.

0.0000E+00 Znudg Nudging/relaxation time scale (days)

for free-surface.

0.0000E+00 M2nudg Nudging/relaxation time scale (days)

for 2D momentum.

2.0000E+01 M3nudg Nudging/relaxation time scale (days)

for 3D momentum.

2.0000E+01 obcfac Factor between passive and active

open boundary conditions.

F VolCons?(1) NLM western edge boundary volume conservation. F VolCons?(2) NLM southern edge boundary volume conservation. F VolCons?(3) NLM eastern edge boundary volume conservation. F VolCons?(4) NLM northern edge boundary volume conservation.

10.000 T0 Background potential temperature (C) constant. 35.000 S0 Background salinity (PSU) constant.

1027.000 R0 Background density (kg/m3) used in linear Equation

of State.

1.7000E-04 Tcoef Thermal expansion coefficient (1/Celsius). 7.6000E-04 Scoef Saline contraction coefficient (1/PSU).

1.000 gamma2 Slipperiness variable: free-slip (1.0) or

no-slip (-1.0).

F LuvSrc? Turning OFF momentum point Sources/Sinks. F LwSrc? Turning OFF volume influx point Sources/Sinks. F LtracerSrc?(01) Turning OFF point Sources/Sinks on tracer 01: temp F LtracerSrc?(02) Turning OFF point Sources/Sinks on tracer 02: salt F LsshCLM Turning OFF processing of SSH climatology. F Lm2CLM Turning OFF processing of 2D momentum climatology. F Lm3CLM Turning OFF processing of 3D momentum climatology. F LtracerCLM(01) Turning OFF processing of climatology tracer 01: temp F LtracerCLM(02) Turning OFF processing of climatology tracer 02: salt F LnudgeM2CLM Turning OFF nudging of 2D momentum climatology. F LnudgeM3CLM Turning OFF nudging of 3D momentum climatology. F LnudgeTCLM(01) Turning OFF nudging of climatology tracer 01: temp F LnudgeTCLM(02) Turning OFF nudging of climatology tracer 02: salt T Hout(idFsur) Write out free-surface. T Hout(idUbar) Write out 2D U-momentum component. T Hout(idVbar) Write out 2D V-momentum component. T Hout(idUvel) Write out 3D U-momentum component. T Hout(idVvel) Write out 3D V-momentum component. T Hout(idWvel) Write out W-momentum component. T Hout(idOvel) Write out omega vertical velocity. T Hout(idTvar) Write out tracer 01: temp T Hout(idTvar) Write out tracer 02: salt T Hout(idUbms) Write out bottom U-momentum stress. T Hout(idVbms) Write out bottom V-momentum stress. T Hout(idUbrs) Write out bottom U-current stress. T Hout(idVbrs) Write out bottom V-current stress. T Hout(idUbws) Write out wind-induced, bottom U-wave stress. T Hout(idVbws) Write out wind-induced, bottom V-wave stress. T Hout(idUbcs) Write out max wind + current, bottom U-wave stress. T Hout(idVbcs) Write out max wind + current, bottom V-wave stress. T Hout(idUVwc) Write out max wind + current, bottom UV-wave stress. T Hout(idUbot) Write out bed wave orbital U-velocity. T Hout(idVbot) Write out bed wave orbital V-velocity. T Hout(idUbur) Write out bottom U-momentum above bed. T Hout(idVbvr) Write out bottom V-momentum above bed. T Hout(idU2rs) Write out total 2D u-radiation stress. T Hout(idV2rs) Write out total 2D v-radiation stress. T Hout(idU2Sd) Write out 2D u-momentum stokes velocity. T Hout(idV2Sd) Write out 2D v-momentum stokes velocity. T Hout(idU3rs) Write out total 3D u-radiation stress. T Hout(idV3rs) Write out total 3D v-radiation stress. T Hout(idU3Sd) Write out 3D u-momentum stokes velocity. T Hout(idV3Sd) Write out 3D v-momentum stokes velocity. T Hout(idW3Sd) Write out 3D omega-momentum stokes velocity. T Hout(idW3St) Write out 3D w-momentum stokes velocity. T Hout(idWztw) Write out WEC quasi-static sea level adjustment. T Hout(idWqsp) Write out WEC quasi-static pressure. T Hout(idWbeh) Write out WEC Bernoulli head. T Hout(idWamp) Write out wave height. T Hout(idWlen) Write out wavelength. T Hout(idWdir) Write out wave direction. T Hout(idWptp) Write out wave surface period. T Hout(idWpbt) Write out wave bottom period. T Hout(idWorb) Write out wave bottom orbital velocity. T Hout(idWdif) Write out wave dissipation due to bottom friction. T Hout(idWdib) Write out wave dissipation due to breaking. T Hout(idWdiw) Write out wave dissipation due to white capping. T Hout(idUwav) Wave-avg surface u-velocity. T Hout(idVwav) Wave-avg surface v-velocity. T Hout(idVvis) Write out vertical viscosity: AKv. T Hout(idMtke) Write out turbulent kinetic energy. T Hout(idMtls) Write out turbulent generic length-scale.

Output/Input Files:

Output Restart File: Projects/BoB/out/ocean_rst_ref1.nc

Prefix for History Files: Projects/BoB/out/ocean_inlet_his_ref1 Physical parameters File:

Input Grid File: Projects/BoB/in/roms_grd.nc

Nesting grid connectivity File: Projects/BoB/in/roms_out.nc

Input Boundary File 01: Projects/BoB/in/mercator_bry.nc

Resolution, Grid 02: 0320x0170x032, Parallel Nodes: 4, Tiling: 002x002

Physical Parameters, Grid: 02 =============================

101952 ntimes Number of timesteps for 3-D equations. 50.000 dt Timestep size (s) for 3-D equations.

30 ndtfast Number of timesteps for 2-D equations between

each 3D timestep.

1 ERstr Starting ensemble/perturbation run number. 1 ERend Ending ensemble/perturbation run number. 0 nrrec Number of restart records to read from disk. T LcycleRST Switch to recycle time-records in restart file.

864 nRST Number of timesteps between the writing of data

into restart fields.

1 ninfo Number of timesteps between print of information

to standard output.

T ldefout Switch to create a new output NetCDF file(s).

1728 nHIS Number of timesteps between the writing fields

into history file.

1.0000E-03 nl_visc2 NLM Horizontal, harmonic mixing coefficient

(m2/s) for momentum.

F LuvSponge? Turning OFF sponge on horizontal momentum. F LtracerSponge?(01) Turning OFF sponge on tracer 01: temp F LtracerSponge?(02) Turning OFF sponge on tracer 02: salt

5.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s)

for tracer 01: temp

5.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s)

for tracer 02: salt

5.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s)

for momentum.

5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s)

for turbulent energy.

5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s)

for turbulent generic statistical field.

3.000 gls_p GLS stability exponent. 1.500 gls_m GLS turbulent kinetic energy exponent.

-1.000 gls_n GLS turbulent length scale exponent.

7.6000E-06 gls_Kmin GLS minimum value of turbulent kinetic energy. 1.0000E-12 gls_Pmin GLS minimum value of dissipation. 5.4770E-01 gls_cmu0 GLS stability coefficient. 1.4400E+00 gls_c1 GLS shear production coefficient. 1.9200E+00 gls_c2 GLS dissipation coefficient.

-4.0000E-01 gls_c3m GLS stable buoyancy production coefficient.

1.0000E+00 gls_c3p GLS unstable buoyancy production coefficient. 1.0000E+00 gls_sigk GLS constant Schmidt number for TKE. 1.3000E+00 gls_sigp GLS constant Schmidt number for PSI.

1400.000 charnok_alpha Charnok factor for Zos calculation.

0.500 zos_hsig_alpha Factor for Zos calculation using Hsig(Awave). 0.250 sz_alpha Factor for Wave dissipation surface tke flux .

100.000 crgban_cw Factor for Craig/Banner surface tke flux.

0.000 wec_alpha WEC factor for roller/breaking energy distribution.

3.0000E-04 rdrg Linear bottom drag coefficient (m/s). 2.5000E-02 rdrg2 Quadratic bottom drag coefficient. 1.5000E-02 Zob Bottom roughness (m). 5.0000E-01 Zos Surface roughness (m).

2 Vtransform S-coordinate transformation equation. 4 Vstretching S-coordinate stretching function.

7.0000E+00 theta_s S-coordinate surface control parameter. 2.0000E+00 theta_b S-coordinate bottom control parameter.

250.000 Tcline S-coordinate surface/bottom layer width (m) used

in vertical coordinate stretching.

1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation.

1.000 dstart Time-stamp assigned to model initialization (days).

20040101.00 time_ref Reference time for units attribute (yyyymmdd.dd)

2.0000E+01 Tnudg(01) Nudging/relaxation time scale (days)

for tracer 01: temp

2.0000E+01 Tnudg(02) Nudging/relaxation time scale (days)

for tracer 02: salt

0.0000E+00 Tnudg_SSS Nudging/relaxation time scale (days)

for sea surface salinity.

0.0000E+00 Znudg Nudging/relaxation time scale (days)

for free-surface.

0.0000E+00 M2nudg Nudging/relaxation time scale (days)

for 2D momentum.

2.0000E+01 M3nudg Nudging/relaxation time scale (days)

for 3D momentum.

2.0000E+01 obcfac Factor between passive and active

open boundary conditions.

F VolCons?(1) NLM western edge boundary volume conservation. F VolCons?(2) NLM southern edge boundary volume conservation. F VolCons?(3) NLM eastern edge boundary volume conservation. F VolCons?(4) NLM northern edge boundary volume conservation.

10.000 T0 Background potential temperature (C) constant. 35.000 S0 Background salinity (PSU) constant.

1027.000 R0 Background density (kg/m3) used in linear Equation

of State.

1.7000E-04 Tcoef Thermal expansion coefficient (1/Celsius). 7.6000E-04 Scoef Saline contraction coefficient (1/PSU).

1.000 gamma2 Slipperiness variable: free-slip (1.0) or

no-slip (-1.0).

F LuvSrc? Turning OFF momentum point Sources/Sinks. F LwSrc? Turning OFF volume influx point Sources/Sinks. F LtracerSrc?(01) Turning OFF point Sources/Sinks on tracer 01: temp F LtracerSrc?(02) Turning OFF point Sources/Sinks on tracer 02: salt F LsshCLM Turning OFF processing of SSH climatology. F Lm2CLM Turning OFF processing of 2D momentum climatology. F Lm3CLM Turning OFF processing of 3D momentum climatology. F LtracerCLM(01) Turning OFF processing of climatology tracer 01: temp F LtracerCLM(02) Turning OFF processing of climatology tracer 02: salt F LnudgeM2CLM Turning OFF nudging of 2D momentum climatology. F LnudgeM3CLM Turning OFF nudging of 3D momentum climatology. F LnudgeTCLM(01) Turning OFF nudging of climatology tracer 01: temp F LnudgeTCLM(02) Turning OFF nudging of climatology tracer 02: salt T Hout(idFsur) Write out free-surface. T Hout(idUbar) Write out 2D U-momentum component. T Hout(idVbar) Write out 2D V-momentum component. T Hout(idUvel) Write out 3D U-momentum component. T Hout(idVvel) Write out 3D V-momentum component. T Hout(idWvel) Write out W-momentum component. T Hout(idOvel) Write out omega vertical velocity. T Hout(idTvar) Write out tracer 01: temp T Hout(idTvar) Write out tracer 02: salt T Hout(idUbms) Write out bottom U-momentum stress. T Hout(idVbms) Write out bottom V-momentum stress. T Hout(idUbrs) Write out bottom U-current stress. T Hout(idVbrs) Write out bottom V-current stress. T Hout(idUbws) Write out wind-induced, bottom U-wave stress. T Hout(idVbws) Write out wind-induced, bottom V-wave stress. T Hout(idUbcs) Write out max wind + current, bottom U-wave stress. T Hout(idVbcs) Write out max wind + current, bottom V-wave stress. T Hout(idUVwc) Write out max wind + current, bottom UV-wave stress. T Hout(idUbot) Write out bed wave orbital U-velocity. T Hout(idVbot) Write out bed wave orbital V-velocity. T Hout(idUbur) Write out bottom U-momentum above bed. T Hout(idVbvr) Write out bottom V-momentum above bed. T Hout(idU2rs) Write out total 2D u-radiation stress. T Hout(idV2rs) Write out total 2D v-radiation stress. T Hout(idU2Sd) Write out 2D u-momentum stokes velocity. T Hout(idV2Sd) Write out 2D v-momentum stokes velocity. T Hout(idU3rs) Write out total 3D u-radiation stress. T Hout(idV3rs) Write out total 3D v-radiation stress. T Hout(idU3Sd) Write out 3D u-momentum stokes velocity. T Hout(idV3Sd) Write out 3D v-momentum stokes velocity. T Hout(idW3Sd) Write out 3D omega-momentum stokes velocity. T Hout(idW3St) Write out 3D w-momentum stokes velocity. T Hout(idWztw) Write out WEC quasi-static sea level adjustment. T Hout(idWqsp) Write out WEC quasi-static pressure. T Hout(idWbeh) Write out WEC Bernoulli head. T Hout(idWamp) Write out wave height. T Hout(idWlen) Write out wavelength. T Hout(idWdir) Write out wave direction. T Hout(idWptp) Write out wave surface period. T Hout(idWpbt) Write out wave bottom period. T Hout(idWorb) Write out wave bottom orbital velocity. T Hout(idWdif) Write out wave dissipation due to bottom friction. T Hout(idWdib) Write out wave dissipation due to breaking. T Hout(idWdiw) Write out wave dissipation due to white capping. T Hout(idUwav) Wave-avg surface u-velocity. T Hout(idVwav) Wave-avg surface v-velocity. T Hout(idVvis) Write out vertical viscosity: AKv. T Hout(idMtke) Write out turbulent kinetic energy. T Hout(idMtls) Write out turbulent generic length-scale.

Output/Input Files:

Output Restart File: Projects/BoB/out/ocean_rst_ref3.nc Output History File: Projects/BoB/out/ocean_inlet_his_ref3.nc

Physical parameters File:

Input Grid File: Projects/BoB/in/roms_nesting.nc

Nesting grid connectivity File: Projects/BoB/in/roms_out.nc

Tile partition information for Grid 01: 0287x0248x0032 tiling: 002x002

tile Istr Iend Jstr Jend Npts

Number of tracers: 3

0 1 144 1 124 571392 1 145 287 1 124 567424 2 1 144 125 248 571392 3 145 287 125 248 567424

Tile partition information for Grid 02: 0320x0170x0032 tiling: 002x002

tile Istr Iend Jstr Jend Npts

Number of tracers: 3

0 1 160 1 85 435200 1 161 320 1 85 435200 2 1 160 86 170 435200 3 161 320 86 170 435200

Tile minimum and maximum fractional coordinates for Grid 01:

(interior points only)

tile Xmin Xmax Ymin Ymax grid

0 0.50 144.50 0.50 124.50 RHO-points 1 144.50 287.50 0.50 124.50 RHO-points 2 0.50 144.50 124.50 248.50 RHO-points 3 144.50 287.50 124.50 248.50 RHO-points

0 1.00 144.50 0.50 124.50 U-points 1 144.50 287.00 0.50 124.50 U-points 2 1.00 144.50 124.50 248.50 U-points 3 144.50 287.00 124.50 248.50 U-points

0 0.50 144.50 1.00 124.50 V-points 1 144.50 287.50 1.00 124.50 V-points 2 0.50 144.50 124.50 248.00 V-points 3 144.50 287.50 124.50 248.00 V-points

Tile minimum and maximum fractional coordinates for Grid 02:

(interior points only)

tile Xmin Xmax Ymin Ymax grid

0 0.50 160.50 0.50 85.50 RHO-points 1 160.50 320.50 0.50 85.50 RHO-points 2 0.50 160.50 85.50 170.50 RHO-points 3 160.50 320.50 85.50 170.50 RHO-points

0 1.00 160.50 0.50 85.50 U-points 1 160.50 320.00 0.50 85.50 U-points 2 1.00 160.50 85.50 170.50 U-points 3 160.50 320.00 85.50 170.50 U-points

0 0.50 160.50 1.00 85.50 V-points 1 160.50 320.50 1.00 85.50 V-points 2 0.50 160.50 85.50 170.00 V-points 3 160.50 320.50 85.50 170.00 V-points

Maximum halo size in XI and ETA directions:

HaloSizeI(1) = 468 HaloSizeJ(1) = 411

TileSide?(1) = 150 TileSize?(1) = 19650

Maximum halo size in XI and ETA directions:

HaloSizeI(2) = 525 HaloSizeJ(2) = 300

TileSide?(2) = 169 TileSize?(2) = 15886

Sediment Parameters, Grid: 01 =============================

Size Sd50 Csed Srho Wsed Erate poros Class (mm) (kg/m3) (kg/m3) (mm/s) (kg/m2/s) (nondim)

1 1.0000E-01 0.0000E+00 2.6500E+03 1.0000E+01 5.0000E-03 0.0000E+00

tau_ce tau_cd nl_tnu2 nl_tnu4 Akt_bak Tnudg (N/m2) (N/m2) (m2/s) (m4/s) (m2/s) (day)

1 1.0000E-01 1.0000E-02 0.0000E+00 0.0000E+00 5.0000E-06 0.0000E+00

morph_fac (nondim)

1 1.0000E+01

New bed layer formed when deposition exceeds 0.10000E-01 (m). Two first layers are combined when 2nd layer smaller than 0.00000E+00 (m). Rate coefficient for bed load transport = 0.15000E+00

F LtracerSponge?(03Turning OFF sponge on tracer 03: mud_01 F LtracerSrc?(03) Turning OFF point sources/Sink on tracer 03: mud_01 F LtracerCLM(03) Turning OFF processing of climatology tracer 03: mud_01 F LnudgeTCLM(03) Turning OFF nudging of climatology tracer 03: mud_01 T Hout(idTvar) Write out sediment01: mud_01 T Hout(idfrac) Write out bed fraction, sediment 01: mudfrac_01 T Hout(idfrac) Write out mass, sediment 01: mudmass_01 T Hout(idSbed) Write out BED property 01: bed_thickness T Hout(idSbed) Write out BED property 02: bed_age T Hout(idSbed) Write out BED property 03: bed_porosity T Hout(idSbed) Write out BED property 04: bed_biodiff T Hout(idBott) Write out BOTTOM property01: grain_diameter T Hout(idBott) Write out BOTTOM property02: grain_density T Hout(idBott) Write out BOTTOM property03: settling_vel T Hout(idBott) Write out BOTTOM property04: erosion_stress T Hout(idBott) Write out BOTTOM property05: ripple_length T Hout(idBott) Write out BOTTOM property06: ripple_height T Hout(idBott) Write out BOTTOM property07: bed_wave_amp T Hout(idBott) Write out BOTTOM property08: Zo_def T Hout(idBott) Write out BOTTOM property09: Zo_app T Hout(idBott) Write out BOTTOM property15: active_layer_thickness T Hout(idBott) Write out BOTTOM property17: bed_inund_depth T Hout(idBott) Write out BOTTOM property18: dep_net

Sediment Parameters, Grid: 02 =============================

Size Sd50 Csed Srho Wsed Erate poros Class (mm) (kg/m3) (kg/m3) (mm/s) (kg/m2/s) (nondim)

1 1.0000E-01 0.0000E+00 2.6500E+03 1.0000E+01 5.0000E-03 0.0000E+00

tau_ce tau_cd nl_tnu2 nl_tnu4 Akt_bak Tnudg (N/m2) (N/m2) (m2/s) (m4/s) (m2/s) (day)

1 1.0000E-01 1.0000E-02 0.0000E+00 0.0000E+00 5.0000E-06 0.0000E+00

morph_fac (nondim)

1 1.0000E+01

New bed layer formed when deposition exceeds 0.10000E-01 (m). Two first layers are combined when 2nd layer smaller than 0.00000E+00 (m). Rate coefficient for bed load transport = 0.15000E+00

F LtracerSponge?(03Turning OFF sponge on tracer 03: mud_01 F LtracerSrc?(03) Turning OFF point sources/Sink on tracer 03: mud_01 F LtracerCLM(03) Turning OFF processing of climatology tracer 03: mud_01 F LnudgeTCLM(03) Turning OFF nudging of climatology tracer 03: mud_01 T Hout(idTvar) Write out sediment01: mud_01 T Hout(idfrac) Write out bed fraction, sediment 01: mudfrac_01 T Hout(idfrac) Write out mass, sediment 01: mudmass_01 T Hout(idSbed) Write out BED property 01: bed_thickness T Hout(idSbed) Write out BED property 02: bed_age T Hout(idSbed) Write out BED property 03: bed_porosity T Hout(idSbed) Write out BED property 04: bed_biodiff T Hout(idBott) Write out BOTTOM property01: grain_diameter T Hout(idBott) Write out BOTTOM property02: grain_density T Hout(idBott) Write out BOTTOM property03: settling_vel T Hout(idBott) Write out BOTTOM property04: erosion_stress T Hout(idBott) Write out BOTTOM property05: ripple_length T Hout(idBott) Write out BOTTOM property06: ripple_height T Hout(idBott) Write out BOTTOM property07: bed_wave_amp T Hout(idBott) Write out BOTTOM property08: Zo_def T Hout(idBott) Write out BOTTOM property09: Zo_app T Hout(idBott) Write out BOTTOM property15: active_layer_thickness T Hout(idBott) Write out BOTTOM property17: bed_inund_depth T Hout(idBott) Write out BOTTOM property18: dep_net

Lateral Boundary Conditions: NLM ============================

Variable Grid West Edge South Edge East Edge North Edge --------- ---- ---------- ---------- ---------- ----------

zeta 1 Chapman Imp Chapman Imp Chapman Imp Closed

2

@ �� �33333 3�?`

ubar 1 Flather Flather Flather Closed

2

@ �� �33333 3�?`

vbar 1 Flather Flather Flather Closed

2

@ �� �33333 3�?`

u 1 Rad + Nud Rad + Nud Rad + Nud Closed

2

@ �� �33333 3�?`

v 1 Rad + Nud Rad + Nud Rad + Nud Closed

2

@ �� �33333 3�?`

temp 1 Rad + Nud Rad + Nud Rad + Nud Closed

2

@ �� �33333 3�?`

salt 1 Rad + Nud Rad + Nud Rad + Nud Closed

2

@ �� �33333 3�?`

mud_01 1 Gradient Closed Gradient Gradient

2 Nested Nested Nested Nested

tke 1 Gradient Gradient Gradient Closed

2 Nested Nested Nested Nested

ubar_stokes 1 Gradient Closed Gradient Gradient

2 Nested Nested Nested Nested

vbar_stokes 1 Gradient Closed Gradient Gradient

2 Nested Nested Nested Nested

u_stokes 1 Gradient Closed Gradient Gradient

2 Nested Nested Nested Nested

v_stokes 1 Gradient Closed Gradient Gradient

2 Nested Nested Nested Nested

Activated C-preprocessing Options:

BOB_REFINED Bay of Bengal sediment transport with nesting ANA_BPFLUX Analytical bottom passive tracers fluxes. ANA_BSFLUX Analytical kinematic bottom salinity flux. ANA_BTFLUX Analytical kinematic bottom temperature flux. ANA_FSOBC Analytical free-surface boundary conditions. ANA_INITIAL Analytical initial conditions. ANA_M2OBC Analytical 2D momentum boundary conditions. ANA_SEDIMENT Analytical sediment initial conditions. ANA_SMFLUX Analytical kinematic surface momentum flux. ANA_SPFLUX Analytical surface passive tracer fluxes. ANA_SSFLUX Analytical kinematic surface salinity flux. ANA_STFLUX Analytical kinematic surface temperature flux. ASSUMED_SHAPE Using assumed-shape arrays. DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002). DOUBLE_PRECISION Double precision arithmetic. GLS_MIXING Generic Length-Scale turbulence closure. KANTHA_CLAYSON Kantha and Clayson stability function formulation. MASKING Land/Sea masking. MCT_LIB Using Model Coupling Toolkit library. MIX_S_UV Mixing of momentum along constant S-surfaces. MPI MPI distributed-memory configuration. WEC_VF Vortex Force wave current interaction. WDISS_WAVEMOD Wave energy dissipation acquired from coupled wave model. NESTING Nesting grids: Composite and Refinement. NONLINEAR Nonlinear Model. !NONLIN_EOS Linear Equation of State for seawater. N2S2_HORAVG Horizontal smoothing of buoyancy and shear. !ONE_WAY Two-way nesting in refinement grids. POWER_LAW Power-law shape time-averaging barotropic filter. PROFILE Time profiling activated . K_GSCHEME Third-order upstream advection of TKE fields. RI_SPLINES Parabolic Spline Reconstruction for Richardson Number. !RST_SINGLE Double precision fields in restart NetCDF file. SEDIMENT Cohesive and noncohesive sediments. SUSPLOAD Activate suspended sediment transport. NONCOHESIVE_BED1 Activate non-cohesive (original) sediment bed. SOLVE3D Solving 3D Primitive Equations. SPLINES_VDIFF Parabolic Spline Reconstruction for Vertical Diffusion. SPLINES_VVISC Parabolic Spline Reconstruction for Vertical Viscosity. SSW_BBL Styles and Glenn Bottom Boundary Layer - modified. SSW_CALC_ZNOT Internal computation of bottom roughness. SWAN_COUPLING SWAN model coupling. TS_MPDATA Recursive flux corrected MPDATA 3D advection of tracers. UV_ADV Advection of momentum. UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum. UV_C4VADVECTION Fourth-order centered vertical advection of momentum. UV_KIRBY Compute uwave and vwave Kirby avg velocities. UV_VIS2 Harmonic mixing of momentum. VAR_RHO_2D Variable density barotropic mode. WAVES_OCEAN Two-way wave-ocean models coupling.

Process Information:

Node # 1 (pid= 17599) is active. Node # 2 (pid= 17600) is active. Node # 3 (pid= 17602) is active. Node # 0 (pid= 17598) is active. Node # 0 (pid= 17598) is active. Node # 3 (pid= 17602) is active. Node # 1 (pid= 17599) is active. Node # 2 (pid= 17600) is active.

SWAN grid 2 is preparing computation

MCT::m_SparseMatrixDecompComputeSegments_: segment number difference error, stat =-32541 000.MCT(MPEU)::die.: from MCT::m_SparseMatrixDecompComputeSegments_()

MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 2.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them.

I shall be thankful for your suggestions.

Chirantan


Top
 Profile  
Reply with quote  
Display posts from previous:  Sort by  
Post new topic Reply to topic  [ 1 post ] 

All times are UTC


Who is online

Users browsing this forum: No registered users and 2 guests


You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum

Search for:
Jump to:  
Powered by phpBB® Forum Software © phpBB Group