ERROR: Abnormal termination: NetCDF OUTPUT.

General scientific issues regarding ROMS

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moritz.wandres
Posts: 21
Joined: Fri Mar 15, 2013 1:30 pm
Location: UWA Oceans Institute

ERROR: Abnormal termination: NetCDF OUTPUT.

#1 Unread post by moritz.wandres »

Hi everyone,

I recently switched machines and now I am having problems running my application. Hopefully, someone can point me in the right direction.
I compiled ROMS 3.7 on the new machine and was able to run the Upwelling Test Case successfully. I'm using the Intel compiler and NetCDF (4.3.2). When trying to run my own application I get the following error.

Code: Select all


 Model Input Parameters:  ROMS/TOMS version 3.7  
                          Thursday - March 5, 2015 -  7:21:07 PM
 -----------------------------------------------------------------------------

 Shelf Test Case

 Operating system : Linux
 CPU/hardware     : x86_64
 Compiler system  : ftn
 Compiler command : /opt/cray/craype/2.1.2/bin/ftn
 Compiler flags   : -dynamic -g -O0

 Input Script  : 

 SVN Root URL  : https://www.myroms.org/svn/src/trunk
 SVN Revision  : exported

 Local Root    : /home/mwandres/ROMS/trunk
 Header Dir    : /group/director967/mwandres/ROMS/SWAROMS/Run_01
 Header file   : shelf_test.h
 Analytical Dir: /home/mwandres/ROMS/trunk/ROMS/Functionals

 Resolution, Grid 01: 0658x0658x030,  Parallel Nodes:  24,  Tiling: 006x004


 Physical Parameters, Grid: 01
 =============================

     771120  ntimes            Number of timesteps for 3-D equations.
     40.000  dt                Timestep size (s) for 3-D equations.
         20  ndtfast           Number of timesteps for 2-D equations between
                                 each 3D timestep.
          1  ERstr             Starting ensemble/perturbation run number.
          1  ERend             Ending ensemble/perturbation run number.
          0  nrrec             Number of restart records to read from disk.
          F  LcycleRST         Switch to recycle time-records in restart file.
         90  nRST              Number of timesteps between the writing of data
                                 into restart fields.
          1  ninfo             Number of timesteps between print of information
                                 to standard output.
          T  ldefout           Switch to create a new output NetCDF file(s).
          0  nHIS              Number of timesteps between the writing fields
                                 into history file.
          1  ntsAVG            Starting timestep for the accumulation of output
                                 time-averaged data.
       2160  nAVG              Number of timesteps between the writing of
                                 time-averaged data into averages file.
          T  LuvSponge         Turning ON  sponge on horizontal momentum.
          T  LtracerSponge(01) Turning ON  sponge on tracer 01: temp
          T  LtracerSponge(02) Turning ON  sponge on tracer 02: salt
 1.0000E-06  Akt_bak(01)       Background vertical mixing coefficient (m2/s)
                                 for tracer 01: temp
 1.0000E-06  Akt_bak(02)       Background vertical mixing coefficient (m2/s)
                                 for tracer 02: salt
 1.0000E-05  Akv_bak           Background vertical mixing coefficient (m2/s)
                                 for momentum.
 3.0000E-04  rdrg              Linear bottom drag coefficient (m/s).
 3.0000E-03  rdrg2             Quadratic bottom drag coefficient.
 2.0000E-02  Zob               Bottom roughness (m).
          1  lmd_Jwt           Jerlov water type.
          2  Vtransform        S-coordinate transformation equation.
          2  Vstretching       S-coordinate stretching function.
 5.0000E+00  theta_s           S-coordinate surface control parameter.
 3.0000E-01  theta_b           S-coordinate bottom  control parameter.
    100.000  Tcline            S-coordinate surface/bottom layer width (m) used
                                 in vertical coordinate stretching.
   1025.000  rho0              Mean density (kg/m3) for Boussinesq approximation.
      0.000  dstart            Time-stamp assigned to model initialization (days).
      0.000  tide_start        Reference time origin for tidal forcing (days).
20110101.00  time_ref          Reference time for units attribute (yyyymmdd.dd)
 7.0000E+00  Tnudg(01)         Nudging/relaxation time scale (days)
                                 for tracer 01: temp
 7.0000E+00  Tnudg(02)         Nudging/relaxation time scale (days)
                                 for tracer 02: salt
 7.0000E+00  Znudg             Nudging/relaxation time scale (days)
                                 for free-surface.
 7.0000E+00  M2nudg            Nudging/relaxation time scale (days)
                                 for 2D momentum.
 7.0000E+00  M3nudg            Nudging/relaxation time scale (days)
                                 for 3D momentum.
 1.0000E+01  obcfac            Factor between passive and active
                                 open boundary conditions.
          F  VolCons(1)        NLM western  edge boundary volume conservation.
          F  VolCons(2)        NLM southern edge boundary volume conservation.
          F  VolCons(3)        NLM eastern  edge boundary volume conservation.
          F  VolCons(4)        NLM northern edge boundary volume conservation.
     14.000  T0                Background potential temperature (C) constant.
     35.000  S0                Background salinity (PSU) constant.
      1.000  gamma2            Slipperiness variable: free-slip (1.0) or 
                                                      no-slip (-1.0).
          F  LuvSrc            Turning OFF momentum point Sources/Sinks.
          F  LwSrc             Turning OFF volume influx point Sources/Sinks.
          F  LtracerSrc(01)    Turning OFF point Sources/Sinks on tracer 01: temp
          F  LtracerSrc(02)    Turning OFF point Sources/Sinks on tracer 02: salt
          T  LsshCLM           Turning ON  processing of SSH climatology.
          T  Lm2CLM            Turning ON  processing of 2D momentum climatology.
          T  Lm3CLM            Turning ON  processing of 3D momentum climatology.
          T  LtracerCLM(01)    Turning ON  processing of climatology tracer 01: temp
          T  LtracerCLM(02)    Turning ON  processing of climatology tracer 02: salt
          T  LnudgeM2CLM       Turning ON  nudging of 2D momentum climatology.
          T  LnudgeM3CLM       Turning ON  nudging of 3D momentum climatology.
          T  LnudgeTCLM(01)    Turning ON  nudging of climatology tracer 01: temp
          T  LnudgeTCLM(02)    Turning ON  nudging of climatology tracer 02: salt
          T  Hout(idFsur)      Write out free-surface.
          T  Hout(idu2dE)      Write out 2D U-eastward  at RHO-points.
          T  Hout(idv2dN)      Write out 2D V-northward at RHO-points.
          T  Hout(idu3dE)      Write out 3D U-wastward  component at RHO-points.
          T  Hout(idv3dN)      Write out 3D V-northward component at RHO-points.
          T  Hout(idTvar)      Write out tracer 01: temp
          T  Hout(idTvar)      Write out tracer 02: salt
          T  Hout(idDano)      Write out density anomaly.

          T  Aout(idFsur)      Write out averaged free-surface.
          T  Aout(idu2dE)      Write out averaged 2D U-eastward  at RHO-points.
          T  Aout(idv2dN)      Write out averaged 2D V-northward at RHO-points.
          T  Aout(idu3dE)      Write out averaged 3D U-eastward  at RHO-points.
          T  Aout(idv3dN)      Write out averaged 3D V-northward at RHO-points.
          T  Aout(idTvar)      Write out averaged tracer 01: temp
          T  Aout(idTvar)      Write out averaged tracer 02: salt

 Output/Input Files:

             Output Restart File:  ocean_rst.nc
            Output Averages File:  ocean_avg.nc
                 Input Grid File:  /group/director967/mwandres/SWAROMS_forcing/swaroms_grid.nc
    Input Nonlinear Initial File:  /group/director967/mwandres/SWAROMS_forcing/ini_swaroms_1.nc
           Input Forcing File 01:  /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_1.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_2.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_3.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_4.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_5.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_6.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_7.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_8.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_9.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_10.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_11.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_12.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_13.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_14.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_15.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_16.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_17.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_18.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_19.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_20.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_21.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_22.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_23.nc
                                   /group/director967/mwandres/SWAROMS_forcing/wind_swaroms_hourly_24.nc
           Input Forcing File 02:  /group/director967/mwandres/SWAROMS_forcing/heatflux_swaroms.nc
           Input Forcing File 03:  /group/director967/mwandres/SWAROMS_forcing/slp_swaroms_1.nc
                                   /group/director967/mwandres/SWAROMS_forcing/slp_swaroms_2.nc
                                   /group/director967/mwandres/SWAROMS_forcing/slp_swaroms_3.nc
           Input Forcing File 04:  /group/director967/mwandres/SWAROMS_forcing/shortwaveflux_swaroms.nc
           Input Forcing File 05:  /group/director967/mwandres/SWAROMS_forcing/SSS_swaroms.nc
           Input Forcing File 06:  /group/director967/mwandres/SWAROMS_forcing/SST_swaroms.nc
           Input Forcing File 07:  /group/director967/mwandres/SWAROMS_forcing/tide_swaroms.nc
          Input Climatology File:  /group/director967/mwandres/SWAROMS_forcing/clm_swaroms_5-daily.nc
   Input Nudge Coefficients File:  /group/director967/mwandres/SWAROMS_forcing/nudgcoef_swaroms.nc
             Input Boundary File:  /group/director967/mwandres/SWAROMS_forcing/bry_swaroms_daily.nc

 Tile partition information for Grid 01:  0658x0658x0030  tiling: 006x004

     tile     Istr     Iend     Jstr     Jend     Npts

        0        1      109        1      164   536280
        1      110      219        1      164   541200
        2      220      329        1      164   541200
        3      330      439        1      164   541200
        4      440      549        1      164   541200
        5      550      658        1      164   536280
        6        1      109      165      329   539550
        7      110      219      165      329   544500
        8      220      329      165      329   544500
        9      330      439      165      329   544500
       10      440      549      165      329   544500
       11      550      658      165      329   539550
       12        1      109      330      494   539550
       13      110      219      330      494   544500
       14      220      329      330      494   544500
       15      330      439      330      494   544500
       16      440      549      330      494   544500
       17      550      658      330      494   539550
       18        1      109      495      658   536280
       19      110      219      495      658   541200
       20      220      329      495      658   541200
       21      330      439      495      658   541200
       22      440      549      495      658   541200
       23      550      658      495      658   536280

 Tile minimum and maximum fractional coordinates for Grid 01:
   (interior points only)

     tile     Xmin     Xmax     Ymin     Ymax     grid

        0     0.50   109.50     0.50   164.50  RHO-points
        1   109.50   219.50     0.50   164.50  RHO-points
        2   219.50   329.50     0.50   164.50  RHO-points
        3   329.50   439.50     0.50   164.50  RHO-points
        4   439.50   549.50     0.50   164.50  RHO-points
        5   549.50   658.50     0.50   164.50  RHO-points
        6     0.50   109.50   164.50   329.50  RHO-points
        7   109.50   219.50   164.50   329.50  RHO-points
        8   219.50   329.50   164.50   329.50  RHO-points
        9   329.50   439.50   164.50   329.50  RHO-points
       10   439.50   549.50   164.50   329.50  RHO-points
       11   549.50   658.50   164.50   329.50  RHO-points
       12     0.50   109.50   329.50   494.50  RHO-points
       13   109.50   219.50   329.50   494.50  RHO-points
       14   219.50   329.50   329.50   494.50  RHO-points
       15   329.50   439.50   329.50   494.50  RHO-points
       16   439.50   549.50   329.50   494.50  RHO-points
       17   549.50   658.50   329.50   494.50  RHO-points
       18     0.50   109.50   494.50   658.50  RHO-points
       19   109.50   219.50   494.50   658.50  RHO-points
       20   219.50   329.50   494.50   658.50  RHO-points
       21   329.50   439.50   494.50   658.50  RHO-points
       22   439.50   549.50   494.50   658.50  RHO-points
       23   549.50   658.50   494.50   658.50  RHO-points

        0     1.00   109.50     0.50   164.50    U-points
        1   109.50   219.50     0.50   164.50    U-points
        2   219.50   329.50     0.50   164.50    U-points
        3   329.50   439.50     0.50   164.50    U-points
        4   439.50   549.50     0.50   164.50    U-points
        5   549.50   658.00     0.50   164.50    U-points
        6     1.00   109.50   164.50   329.50    U-points
        7   109.50   219.50   164.50   329.50    U-points
        8   219.50   329.50   164.50   329.50    U-points
        9   329.50   439.50   164.50   329.50    U-points
       10   439.50   549.50   164.50   329.50    U-points
       11   549.50   658.00   164.50   329.50    U-points
       12     1.00   109.50   329.50   494.50    U-points
       13   109.50   219.50   329.50   494.50    U-points
       14   219.50   329.50   329.50   494.50    U-points
       15   329.50   439.50   329.50   494.50    U-points
       16   439.50   549.50   329.50   494.50    U-points
       17   549.50   658.00   329.50   494.50    U-points
       18     1.00   109.50   494.50   658.50    U-points
       19   109.50   219.50   494.50   658.50    U-points
       20   219.50   329.50   494.50   658.50    U-points
       21   329.50   439.50   494.50   658.50    U-points
       22   439.50   549.50   494.50   658.50    U-points
       23   549.50   658.00   494.50   658.50    U-points

        0     0.50   109.50     1.00   164.50    V-points
        1   109.50   219.50     1.00   164.50    V-points
        2   219.50   329.50     1.00   164.50    V-points
        3   329.50   439.50     1.00   164.50    V-points
        4   439.50   549.50     1.00   164.50    V-points
        5   549.50   658.50     1.00   164.50    V-points
        6     0.50   109.50   164.50   329.50    V-points
        7   109.50   219.50   164.50   329.50    V-points
        8   219.50   329.50   164.50   329.50    V-points
        9   329.50   439.50   164.50   329.50    V-points
       10   439.50   549.50   164.50   329.50    V-points
       11   549.50   658.50   164.50   329.50    V-points
       12     0.50   109.50   329.50   494.50    V-points
       13   109.50   219.50   329.50   494.50    V-points
       14   219.50   329.50   329.50   494.50    V-points
       15   329.50   439.50   329.50   494.50    V-points
       16   439.50   549.50   329.50   494.50    V-points
       17   549.50   658.50   329.50   494.50    V-points
       18     0.50   109.50   494.50   658.00    V-points
       19   109.50   219.50   494.50   658.00    V-points
       20   219.50   329.50   494.50   658.00    V-points
       21   329.50   439.50   494.50   658.00    V-points
       22   439.50   549.50   494.50   658.00    V-points
       23   549.50   658.50   494.50   658.00    V-points

 Maximum halo size in XI and ETA directions:

               HaloSizeI(1) =     244
               HaloSizeJ(1) =     354
                TileSide(1) =     171
                TileSize(1) =   19836


 Lateral Boundary Conditions: NLM
 ============================

 Variable               Grid  West Edge    South Edge   East Edge    North Edge
 ---------              ----  ----------   ----------   ----------   ----------

 zeta                     1   Chapman Exp  Chapman Exp  Chapman Exp  Chapman Exp

 ubar                     1   Shchepetkin  Shchepetkin  Shchepetkin  Shchepetkin

 vbar                     1   Shchepetkin  Shchepetkin  Shchepetkin  Shchepetkin

 u                        1   Rad + Nud    Rad + Nud    Rad + Nud    Rad + Nud

 v                        1   Rad + Nud    Rad + Nud    Rad + Nud    Rad + Nud

 temp                     1   Rad + Nud    Rad + Nud    Rad + Nud    Rad + Nud

 salt                     1   Rad + Nud    Rad + Nud    Rad + Nud    Rad + Nud

 Activated C-preprocessing Options:

 SHELF_TEST          Shelf Test Case
 ADD_FSOBC           Adding tidal elevation to processed OBC data.
 ADD_M2OBC           Adding tidal currents to processed OBC data.
 ANA_BSFLUX          Analytical kinematic bottom salinity flux.
 ANA_BTFLUX          Analytical kinematic bottom temperature flux.
 ASSUMED_SHAPE       Using assumed-shape arrays.
 ATM_PRESS           Impose atmospheric pressure onto sea surface.
 AVERAGES            Writing out time-averaged nonlinear model fields.
 CURVGRID            Orthogonal curvilinear grid.
 DJ_GRADPS           Parabolic Splines density Jacobian (Shchepetkin, 2002).
 DOUBLE_PRECISION    Double precision arithmetic.
 LMD_CONVEC          LMD convective mixing due to shear instability.
 LMD_MIXING          Large/McWilliams/Doney interior mixing.
 LMD_NONLOCAL        LMD convective nonlocal transport.
 LMD_RIMIX           LMD diffusivity due to shear instability.
 LMD_SKPP            KPP surface boundary layer mixing.
 MASKING             Land/Sea masking.
 MPI                 MPI distributed-memory configuration.
 NONLINEAR           Nonlinear Model.
 NONLIN_EOS          Nonlinear Equation of State for seawater.
 POWER_LAW           Power-law shape time-averaging barotropic filter.
 PROFILE             Time profiling activated .
 QCORRECTION         Surface net heat flux correction.
 RADIATION_2D        Use tangential phase speed in radiation conditions.
 !RST_SINGLE         Double precision fields in restart NetCDF file.
 SALINITY            Using salinity.
 SRELAXATION         Surface salinity relaxation as surface flux.
 SOLVE3D             Solving 3D Primitive Equations.
 SPLINES             Conservative parabolic spline reconstruction.
 SSH_TIDES           Add tidal elevation to SSH climatology.
 TS_U3HADVECTION     Third-order upstream horizontal advection of tracers.
 TS_C4VADVECTION     Fourth-order centered vertical advection of tracers.
 UV_ADV              Advection of momentum.
 UV_COR              Coriolis term.
 UV_U3HADVECTION     Third-order upstream horizontal advection of 3D momentum.
 UV_C4VADVECTION     Fourth-order centered vertical advection of momentum.
 UV_QDRAG            Quadratic bottom stress.
 UV_TIDES            Add tidal currents to 2D momentum climatologies.
 VAR_RHO_2D          Variable density barotropic mode.

 Process Information:

 Node #  0 (pid=   26266) is active.
 Node #  5 (pid=   26271) is active.
 Node #  6 (pid=   26272) is active.
 Node #  7 (pid=   26273) is active.
 Node # 13 (pid=   26279) is active.
 Node # 11 (pid=   26277) is active.
 Node # 15 (pid=   26281) is active.
 Node #  4 (pid=   26270) is active.
 Node # 10 (pid=   26276) is active.
 Node # 12 (pid=   26278) is active.
 Node # 17 (pid=   26283) is active.
 Node # 21 (pid=   26287) is active.
 Node # 18 (pid=   26284) is active.
 Node # 22 (pid=   26288) is active.
 Node #  9 (pid=   26275) is active.
 Node #  3 (pid=   26269) is active.
 Node # 19 (pid=   26285) is active.
 Node # 16 (pid=   26282) is active.
 Node # 20 (pid=   26286) is active.
 Node # 14 (pid=   26280) is active.
 Node #  1 (pid=   26267) is active.
 Node #  8 (pid=   26274) is active.
 Node # 23 (pid=   26289) is active.
 Node #  2 (pid=   26268) is active.

 INITIAL: Configuring and initializing forward nonlinear model ...
 *******

 Vertical S-coordinate System, Grid 01:

 level   S-coord     Cs-curve   Z   at hmin       at hc    half way     at hmax

    30   0.0000000   0.0000000        0.000       0.000       0.000       0.000
    29  -0.0333333  -0.0002280       -0.303      -1.678      -3.871      -4.592
    28  -0.0666667  -0.0010668       -0.607      -3.387      -9.476     -12.703
    27  -0.1000000  -0.0027513       -0.912      -5.138     -17.482     -25.688
    26  -0.1333333  -0.0055210       -1.217      -6.943     -28.568     -44.927
    25  -0.1666667  -0.0096191       -1.524      -8.814     -43.426     -71.823
    24  -0.2000000  -0.0152929       -1.832     -10.765     -62.757    -107.798
    23  -0.2333333  -0.0227930       -2.142     -12.806     -87.273    -154.299
    22  -0.2666667  -0.0323729       -2.454     -14.952    -117.694    -212.786
    21  -0.3000000  -0.0442884       -2.768     -17.214    -154.746    -284.733
    20  -0.3333333  -0.0587960       -3.084     -19.606    -199.156    -371.618
    19  -0.3666667  -0.0761512       -3.403     -22.141    -251.651    -474.915
    18  -0.4000000  -0.0966065       -3.724     -24.830    -312.946    -596.077
    17  -0.4333333  -0.1204077       -4.049     -27.687    -383.741    -736.522
    16  -0.4666667  -0.1477897       -4.377     -30.723    -464.701    -897.603
    15  -0.5000000  -0.1789710       -4.708     -33.949    -556.448   -1080.580
    14  -0.5333333  -0.2141455       -5.043     -37.374    -659.531   -1286.570
    13  -0.5666667  -0.2534730       -5.382     -41.007    -774.405   -1516.494
    12  -0.6000000  -0.2970661       -5.725     -44.853    -901.388   -1771.000
    11  -0.6333333  -0.3449735       -6.071     -48.915   -1040.620   -2050.370
    10  -0.6666667  -0.3971582       -6.422     -53.191   -1191.995   -2354.391
     9  -0.7000000  -0.4534709       -6.776     -57.674   -1355.089   -2682.201
     8  -0.7333333  -0.5136145       -7.134     -62.347   -1529.059   -3032.089
     7  -0.7666667  -0.5771002       -7.494     -67.188   -1712.517   -3401.237
     6  -0.8000000  -0.6431915       -7.857     -72.160   -1903.373   -3785.403
     5  -0.8333333  -0.7108346       -8.222     -77.208   -2098.633   -4178.510
     4  -0.8666667  -0.7785693       -8.587     -82.262   -2294.154   -4572.146
     3  -0.9000000  -0.8444192       -8.949     -87.221   -2484.325   -4954.920
     2  -0.9333333  -0.9057532       -9.308     -91.954   -2661.674   -5311.668
     1  -0.9666667  -0.9591133       -9.660     -96.289   -2816.386   -5622.462
     0  -1.0000000  -1.0000000      -10.000    -100.000   -2935.686   -5861.372

 Time Splitting Weights for Grid 01:    ndtfast =  20    nfast =  29
 ==================================

    Primary            Secondary            Accumulated to Current Step

  1-0.0009651193358779 0.0500000000000000-0.0009651193358779 0.0500000000000000
  2-0.0013488780126037 0.0500482559667939-0.0023139973484816 0.1000482559667939
  3-0.0011514592651645 0.0501156998674241-0.0034654566136460 0.1501639558342179
  4-0.0003735756740661 0.0501732728306823-0.0038390322877122 0.2003372286649002
  5 0.0009829200513762 0.0501919516143856-0.0028561122363360 0.2505291802792858
  6 0.0029141799764308 0.0501428056118168 0.0000580677400948 0.3006719858911026
  7 0.0054132615310267 0.0499970966129952 0.0054713292711215 0.3506690825040978
  8 0.0084687837865132 0.0497264335364439 0.0139401130576347 0.4003955160405417
  9 0.0120633394191050 0.0493029943471183 0.0260034524767397 0.4496985103876600
 10 0.0161716623600090 0.0486998273761630 0.0421751148367486 0.4983983377638230
 11 0.0207585511322367 0.0478912442581626 0.0629336659689853 0.5462895820219856
 12 0.0257765478740990 0.0468533167015507 0.0887102138430843 0.5931428987235363
 13 0.0311633730493853 0.0455644893078458 0.1198735868924696 0.6387073880313821
 14 0.0368391158442262 0.0440063206553765 0.1567127027366958 0.6827137086867585
 15 0.0427031802506397 0.0421643648631652 0.1994158829873354 0.7248780735499237
 16 0.0486309868367616 0.0400292058506332 0.2480468698240970 0.7649072794005569
 17 0.0544704302037591 0.0375976565087951 0.3025173000278562 0.8025049359093520
 18 0.0600380921294285 0.0348741349986072 0.3625553921572847 0.8373790709079592
 19 0.0651152103984763 0.0318722303921358 0.4276706025557610 0.8692513013000949
 20 0.0694434033194839 0.0286164698722119 0.4971140058752449 0.8978677711723068
 21 0.0727201499285569 0.0251442997062377 0.5698341558038018 0.9230120708785445
 22 0.0745940258796570 0.0215082922098099 0.6444281816834588 0.9445203630883544
 23 0.0746596950216180 0.0177785909158270 0.7190878767050768 0.9622989540041814
 24 0.0724526566618460 0.0140456061647461 0.7915405333669228 0.9763445601689276
 25 0.0674437485167025 0.0104229733316538 0.8589842818836253 0.9867675335005814
 26 0.0590334053485720 0.0070507859058187 0.9180176872321973 0.9938183194064002
 27 0.0465456732896125 0.0040991156383901 0.9645633605218099 0.9979174350447904
 28 0.0292219798521905 0.0017718319739095 0.9937853403740005 0.9996892670186999
 29 0.0062146596259994 0.0003107329813000 0.9999999999999999 0.9999999999999999

 ndtfast, nfast =   20  29   nfast/ndtfast =  1.45000

 Centers of gravity and integrals (values must be 1, 1, approx 1/2, 1, 1):

    1.000000000000 1.060707743385 0.530353871693 1.000000000000 1.000000000000

 Power filter parameters, Fgamma, gamma =  0.28400   0.14200

 Metrics information for Grid 01:
 ===============================

 Minimum X-grid spacing, DXmin =  9.15285382E-01 km
 Maximum X-grid spacing, DXmax =  9.88519886E-01 km
 Minimum Y-grid spacing, DYmin =  1.00465782E+00 km
 Maximum Y-grid spacing, DYmax =  1.08378433E+00 km
 Minimum Z-grid spacing, DZmin =  3.03237601E-01 m
 Maximum Z-grid spacing, DZmax =  3.93635877E+02 m

 Minimum barotropic Courant Number =  2.72384155E-02
 Maximum barotropic Courant Number =  7.07848930E-01
 Maximum Coriolis   Courant Number =  3.41865647E-03


 NLM: GET_STATE - Read state initial conditions,             t =     0 00:00:00
                   (Grid 01, File: ini_swaroms_1.nc, Rec=0001, Index=1)
                - free-surface
                   (Min = -1.96265428E-01 Max =  6.32038935E-01)
                - vertically integrated u-momentum component
                   (Min = -9.43264790E-01 Max =  9.74793862E-01)
                - vertically integrated v-momentum component
                   (Min = -9.03534831E-01 Max =  1.00000000E+00)
                - u-momentum component
                   (Min = -9.47758030E-01 Max =  9.99202279E-01)
                - v-momentum component
                   (Min = -9.96947082E-01 Max =  1.00000000E+00)
                - potential temperature
                   (Min = -4.77926821E-01 Max =  3.19486850E+01)
                - salinity
                   (Min =  3.42487820E+01 Max =  3.90081289E+01)
    GET_NGFLD   - tidal period
                   (Min =  2.19720214E+04 Max =  2.38071314E+06)
    GET_2DFLD   - tidal elevation amplitude
                   (Min =  0.00000000E+00 Max =  1.76025754E-01)
    GET_2DFLD   - tidal elevation phase angle
                   (Min =  0.00000000E+00 Max =  6.28318504E+00)
    GET_2DFLD   - tidal current inclination angle
                   (Min =  0.00000000E+00 Max =  6.28318450E+00)
    GET_2DFLD   - tidal current phase angle
                   (Min =  0.00000000E+00 Max =  6.28318508E+00)
    GET_2DFLD   - maximum tidal current, ellipse major axis
                   (Min =  0.00000000E+00 Max =  1.47537251E-01)
    GET_2DFLD   - minimum tidal current, ellipse minor axis
                   (Min = -1.52269089E-02 Max =  2.78817677E-02)
    GET_2DFLD   - surface u-momentum stress,                 t =     0 00:00:00
                   (Rec=0000001, Index=1, File: wind_swaroms_hourly_1.nc)
                   (Tmin=          0.0000 Tmax=         15.5000)
                   (Min = -1.62303570E-04 Max = -1.71978371E-05)
    GET_2DFLD   - surface v-momentum stress,                 t =     0 00:00:00
                   (Rec=0000001, Index=1, File: wind_swaroms_hourly_1.nc)
                   (Tmin=          0.0000 Tmax=         15.5000)
                   (Min =  1.28578441E-06 Max =  1.91043474E-04)
    GET_2DFLD   - surface air pressure,                      t =     0 00:00:00
                   (Rec=0000001, Index=1, File: slp_swaroms_1.nc)
                   (Tmin=          0.0000 Tmax=        120.0000)
                   (Min =  1.00708039E+03 Max =  1.02067391E+03)
    GET_2DFLD   - solar shortwave radiation flux,            t =     0 00:00:00
                   (Rec=0000001, Index=1, File: shortwaveflux_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        364.0000)
                   (Min = -9.41877188E-06 Max = -4.61518713E-06)
    GET_2DFLD   - surface net heat flux,                     t =     0 00:00:00
                   (Rec=0000001, Index=1, File: heatflux_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        364.0000)
                   (Min = -1.28562668E-06 Max =  1.79086748E-05)
    GET_2DFLD   - sea surface temperature climatology,       t =     0 00:00:00
                   (Rec=0000001, Index=1, File: SST_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  1.73455747E+01 Max =  3.19748223E+01)
    GET_2DFLD   - surface net heat flux sensitivity to SST,  t =     0 00:00:00
                   (Rec=0000001, Index=1, File: SST_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -7.34461548E-06 Max = -7.34461548E-06)
    GET_2DFLD   - sea surface salinity climatology,          t =     0 00:00:00
                   (Rec=0000001, Index=1, File: SSS_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.53488108E+01 Max =  3.68430748E+01)
    GET_NGFLD   - free-surface western boundary condition,   t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.68286541E-02 Max =  3.63557369E-01)
    GET_NGFLD   - free-surface eastern boundary condition,   t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -1.11554898E-01 Max =  4.62492943E-01)
    GET_NGFLD   - free-surface southern boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  7.69634396E-02 Max =  2.80776292E-01)
    GET_NGFLD   - free-surface northern boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  2.11504012E-01 Max =  5.73245764E-01)
    GET_NGFLD   - 2D u-momentum western boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.07402840E-01 Max =  1.71332672E-01)
    GET_NGFLD   - 2D v-momentum western boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -1.10001653E-01 Max =  1.44644707E-01)
    GET_NGFLD   - 2D u-momentum eastern boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.40321144E-01 Max =  6.99999988E-01)
    GET_NGFLD   - 2D v-momentum eastern boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -6.99999988E-01 Max =  6.99999988E-01)
    GET_NGFLD   - 2D u-momentum southern boundary condition, t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -1.20745249E-01 Max = -3.61825223E-03)
    GET_NGFLD   - 2D v-momentum southern boundary condition, t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -1.44162789E-01 Max =  1.30990833E-01)
    GET_NGFLD   - 2D u-momentum northern boundary condition, t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -5.13688684E-01 Max =  6.99999988E-01)
    GET_NGFLD   - 2D v-momentum northern boundary condition, t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -4.96419817E-01 Max =  6.99999988E-01)
    GET_NGFLD   - 3D u-momentum western boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -5.66633761E-01 Max =  5.26594341E-01)
    GET_NGFLD   - 3D v-momentum western boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -3.41100842E-01 Max =  3.08129042E-01)
    GET_NGFLD   - 3D u-momentum eastern boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -3.73503655E-01 Max =  9.98474300E-01)
    GET_NGFLD   - 3D v-momentum eastern boundary condition,  t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -9.96947110E-01 Max =  1.00000000E+00)
    GET_NGFLD   - 3D u-momentum southern boundary condition, t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -3.15203428E-01 Max =  1.17294788E-01)
    GET_NGFLD   - 3D v-momentum southern boundary condition, t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -3.67530793E-01 Max =  2.41186172E-01)
    GET_NGFLD   - 3D u-momentum northern boundary condition, t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -5.52202940E-01 Max =  9.96099472E-01)
    GET_NGFLD   - 3D v-momentum northern boundary condition, t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -6.23038769E-01 Max =  1.00000000E+00)
    GET_NGFLD   - temperature western boundary condition,    t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.00000000E+00 Max =  2.28988609E+01)
    GET_NGFLD   - salinity western boundary condition,       t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.42930183E+01 Max =  3.58285446E+01)
    GET_NGFLD   - temperature eastern boundary condition,    t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.00000000E+00 Max =  3.19392090E+01)
    GET_NGFLD   - salinity eastern boundary condition,       t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.43532906E+01 Max =  3.65564423E+01)
    GET_NGFLD   - temperature southern boundary condition,   t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.00000000E+00 Max =  2.03461266E+01)
    GET_NGFLD   - salinity southern boundary condition,      t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.43681564E+01 Max =  3.57434921E+01)
    GET_NGFLD   - temperature northern boundary condition,   t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.00000000E+00 Max =  2.99007492E+01)
    GET_NGFLD   - salinity northern boundary condition,      t =     0 00:00:00
                   (Rec=0000001, Index=2, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.43533630E+01 Max =  3.66022072E+01)
    GET_2DFLD   - sea surface height climatology,            t =     0 00:00:00
                   (Rec=0000001, Index=1, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -1.96265429E-01 Max =  6.32038951E-01)
    GET_2DFLD   - vertically integrated u-momentum climatologt =     0 00:00:00
                   (Rec=0000001, Index=1, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -9.43264782E-01 Max =  9.74793851E-01)
    GET_2DFLD   - vertically integrated v-momentum climatologt =     0 00:00:00
                   (Rec=0000001, Index=1, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -9.03534830E-01 Max =  1.00000000E+00)
    GET_3DFLD   - u-momentum component climatology,          t =     0 00:00:00
                   (Rec=0000001, Index=1, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -9.47758019E-01 Max =  9.99202251E-01)
    GET_3DFLD   - v-momentum component climatology,          t =     0 00:00:00
                   (Rec=0000001, Index=1, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -9.96947110E-01 Max =  1.00000000E+00)
    GET_3DFLD   - potential temperature climatology,         t =     0 00:00:00
                   (Rec=0000001, Index=1, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -4.77926821E-01 Max =  3.19486847E+01)
    GET_3DFLD   - salinity climatology,                      t =     0 00:00:00
                   (Rec=0000001, Index=1, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min =  3.42487831E+01 Max =  3.90081291E+01)

 Basin information for Grid 01:

 Maximum grid stiffness ratios:  rx0 =   1.891907E-01 (Beckmann and Haidvogel)
                                 rx1 =   9.528096E+00 (Haney)

 Initial basin volumes: TotVolume =  1.4833127335E+15 m3
                        MinVolume =  2.9021897077E+05 m3
                        MaxVolume =  3.9720016771E+08 m3
                          Max/Min =  1.3686223428E+03

 NL ROMS/TOMS: started time-stepping: (Grid: 01 TimeSteps: 00000001 - 00771120)

    GET_2DFLD   - surface u-momentum stress,                 t =     0 01:00:00
                   (Rec=0000002, Index=2, File: wind_swaroms_hourly_1.nc)
                   (Tmin=          0.0000 Tmax=         15.5000)
                   (Min = -1.62303570E-04 Max = -1.71978371E-05)
    GET_2DFLD   - surface v-momentum stress,                 t =     0 01:00:00
                   (Rec=0000002, Index=2, File: wind_swaroms_hourly_1.nc)
                   (Tmin=          0.0000 Tmax=         15.5000)
                   (Min =  1.28578441E-06 Max =  1.91043474E-04)
    GET_2DFLD   - surface air pressure,                      t =     0 03:00:00
                   (Rec=0000002, Index=2, File: slp_swaroms_1.nc)
                   (Tmin=          0.0000 Tmax=        120.0000)
                   (Min =  1.00403318E+03 Max =  1.02082240E+03)
    GET_2DFLD   - solar shortwave radiation flux,            t =     1 00:00:00
                   (Rec=0000002, Index=2, File: shortwaveflux_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        364.0000)
                   (Min = -7.78145951E-06 Max = -2.18735630E-06)
    GET_2DFLD   - surface net heat flux,                     t =     1 00:00:00
                   (Rec=0000002, Index=2, File: heatflux_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        364.0000)
                   (Min =  2.67841574E-06 Max =  2.55704424E-05)
    GET_2DFLD   - sea surface temperature climatology,       t =     1 00:00:00
                   (Rec=0000002, Index=2, File: SST_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  1.75029559E+01 Max =  3.19824292E+01)
    GET_2DFLD   - surface net heat flux sensitivity to SST,  t =     1 00:00:00
                   (Rec=0000002, Index=2, File: SST_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -7.34461548E-06 Max = -7.34461548E-06)
    GET_2DFLD   - sea surface salinity climatology,          t =     1 00:00:00
                   (Rec=0000002, Index=2, File: SSS_swaroms.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.54060870E+01 Max =  3.65095995E+01)
    GET_NGFLD   - free-surface western boundary condition,   t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -9.49327350E-02 Max =  3.58419508E-01)
    GET_NGFLD   - free-surface eastern boundary condition,   t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  1.36437759E-01 Max =  4.70546782E-01)
    GET_NGFLD   - free-surface southern boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  1.04657732E-01 Max =  2.61275798E-01)
    GET_NGFLD   - free-surface northern boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  2.24225312E-01 Max =  5.10675550E-01)
    GET_NGFLD   - 2D u-momentum western boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.06651106E-01 Max =  1.78312749E-01)
    GET_NGFLD   - 2D v-momentum western boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -6.12969995E-02 Max =  1.29566967E-01)
    GET_NGFLD   - 2D u-momentum eastern boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.95531243E-01 Max =  6.99999988E-01)
    GET_NGFLD   - 2D v-momentum eastern boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -6.99999988E-01 Max =  6.99999988E-01)
    GET_NGFLD   - 2D u-momentum southern boundary condition, t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -1.20748602E-01 Max =  1.15296310E-02)
    GET_NGFLD   - 2D v-momentum southern boundary condition, t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -8.52280036E-02 Max =  1.21257253E-01)
    GET_NGFLD   - 2D u-momentum northern boundary condition, t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -3.18091184E-01 Max =  6.99999988E-01)
    GET_NGFLD   - 2D v-momentum northern boundary condition, t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -4.16347772E-01 Max =  4.74890292E-01)
    GET_NGFLD   - 3D u-momentum western boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -5.40363312E-01 Max =  5.47621965E-01)
    GET_NGFLD   - 3D v-momentum western boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.26476789E-01 Max =  2.31167585E-01)
    GET_NGFLD   - 3D u-momentum eastern boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.98738420E-01 Max =  9.95667160E-01)
    GET_NGFLD   - 3D v-momentum eastern boundary condition,  t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -9.97168422E-01 Max =  1.00000000E+00)
    GET_NGFLD   - 3D u-momentum southern boundary condition, t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.86866546E-01 Max =  9.49283466E-02)
    GET_NGFLD   - 3D v-momentum southern boundary condition, t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -2.28786692E-01 Max =  1.92137063E-01)
    GET_NGFLD   - 3D u-momentum northern boundary condition, t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -3.57701629E-01 Max =  9.94913638E-01)
    GET_NGFLD   - 3D v-momentum northern boundary condition, t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min = -4.87613171E-01 Max =  5.16477227E-01)
    GET_NGFLD   - temperature western boundary condition,    t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.00000000E+00 Max =  2.30262661E+01)
    GET_NGFLD   - salinity western boundary condition,       t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.42483292E+01 Max =  3.58303986E+01)
    GET_NGFLD   - temperature eastern boundary condition,    t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.00000000E+00 Max =  3.19610729E+01)
    GET_NGFLD   - salinity eastern boundary condition,       t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.43338356E+01 Max =  3.67156944E+01)
    GET_NGFLD   - temperature southern boundary condition,   t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.00000000E+00 Max =  2.06022377E+01)
    GET_NGFLD   - salinity southern boundary condition,      t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.43606453E+01 Max =  3.57745857E+01)
    GET_NGFLD   - temperature northern boundary condition,   t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.00000000E+00 Max =  3.19286232E+01)
    GET_NGFLD   - salinity northern boundary condition,      t =     1 00:00:00
                   (Rec=0000002, Index=1, File: bry_swaroms_daily.nc)
                   (Tmin=          0.0000 Tmax=        359.0000)
                   (Min =  3.44109764E+01 Max =  3.70000000E+01)
    GET_2DFLD   - sea surface height climatology,            t =     2 12:00:00
                   (Rec=0000002, Index=2, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min =  3.58463125E-03 Max =  5.34310818E-01)
    GET_2DFLD   - vertically integrated u-momentum climatologt =     2 12:00:00
                   (Rec=0000002, Index=2, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -2.78307229E-01 Max =  4.91491824E-01)
    GET_2DFLD   - vertically integrated v-momentum climatologt =     2 12:00:00
                   (Rec=0000002, Index=2, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -5.65756917E-01 Max =  6.92312300E-01)
    GET_3DFLD   - u-momentum component climatology,          t =     2 12:00:00
                   (Rec=0000002, Index=2, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -4.47749317E-01 Max =  7.42663324E-01)
    GET_3DFLD   - v-momentum component climatology,          t =     2 12:00:00
                   (Rec=0000002, Index=2, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -6.94904327E-01 Max =  7.16680169E-01)
    GET_3DFLD   - potential temperature climatology,         t =     2 12:00:00
                   (Rec=0000002, Index=2, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min = -2.14943722E-01 Max =  2.55803528E+01)
    GET_3DFLD   - salinity climatology,                      t =     2 12:00:00
                   (Rec=0000002, Index=2, File: clm_swaroms_5-daily.nc)
                   (Tmin=          0.0000 Tmax=        357.5000)
                   (Min =  3.43606720E+01 Max =  3.76055679E+01)

   STEP   Day HH:MM:SS  KINETIC_ENRG   POTEN_ENRG    TOTAL_ENRG    NET_VOLUME
          C => (i,j,k)       Cu            Cv            Cw         Max Speed

      0     0 00:00:00  4.802833E-03  2.229103E+04  2.229104E+04  1.483609E+15
          (649,368,30)  4.177157E-02  3.798408E-02  0.000000E+00  1.409943E+00
      DEF_AVG   - creating average file, Grid 01: ocean_avg.nc

 DEF_VAR - unable to define variable: Tobc_in
           in NetCDF file: ocean_avg.nc

 Elapsed CPU time (seconds):

 Node   #  1 CPU:      16.937
 Node   #  5 CPU:      16.945
 Node   # 21 CPU:      16.941
 Node   # 18 CPU:      16.941
 Node   # 13 CPU:      16.937
 Node   # 17 CPU:      16.941
 Node   #  8 CPU:      16.937
 Node   # 15 CPU:      16.941
 Node   # 20 CPU:      16.941
 Node   # 16 CPU:      16.937
 Node   # 22 CPU:      16.945
 Node   # 19 CPU:      16.941
 Node   # 12 CPU:      16.941
 Node   # 23 CPU:      16.937
 Node   #  4 CPU:      16.937
 Node   # 10 CPU:      16.941
 Node   #  2 CPU:      16.941
 Node   #  7 CPU:      16.941
 Node   #  0 CPU:      16.569
 Node   #  9 CPU:      16.941
 Node   # 14 CPU:      16.941
 Node   # 11 CPU:      16.941
 Node   #  3 CPU:      16.941
 Node   #  6 CPU:      16.945

 ROMS/TOMS - Output NetCDF summary for Grid 01:

 Analytical header files used:

     ROMS/Functionals/ana_btflux.h

 ROMS/TOMS - Output error ............ exit_flag:   3


 ERROR: Abnormal termination: NetCDF OUTPUT.
 REASON: NetCDF: Invalid dimension ID or name                                            
Application 2415487 resources: utime ~372s, stime ~39s, Rss ~556748, inblocks ~41898784, outblocks ~18636

My cppdefs.h is as follows:

Code: Select all

/*
** svn $Id: inlet_test.h 646 2013-01-22 23:35:19Z arango $
*******************************************************************************
** Copyright (c) 2002-2013 The ROMS/TOMS Group                               **
**   Licensed under a MIT/X style license                                    **
**   See License_ROMS.txt                                                    **
*******************************************************************************
**
** Options for Inlet Test Case, waves-ocean (SWAN/ROMS) two-way coupling.
**
** Application flag:   INLET_TEST
** Input script:       ocean_inlet_test.in
**                     coupling_inlet_test.in
**                     sediment_inlet_test.in
*/

#define UV_ADV
#define UV_COR
#define UV_QDRAG
#define ATM_PRESS
#define DJ_GRADPS
#define TS_U3HADVECTION
#define TS_C4VADVECTION
#define NONLIN_EOS
#define SALINITY
#define SSH_TIDES
#define UV_TIDES
#define SOLVE3D
#define MASKING
#define SPLINES
#define QCORRECTION
#define SRELAXATION
#define  CURVGRID
#define AVERAGES
#define LMD_MIXING
#ifdef LMD_MIXING
#define LMD_RIMIX
#define LMD_CONVEC
#define LMD_SKPP
#define LMD_NONLOCAL
#endif
#define ANA_BSFLUX
#define ANA_BTFLUX
#define ADD_FSOBC
#define ADD_M2OBC
#define RADIATION_2D
Has anyone seen this error before and know where it comes from?
Thanks,

Moritz
Last edited by moritz.wandres on Thu Mar 12, 2015 4:34 am, edited 1 time in total.

moritz.wandres
Posts: 21
Joined: Fri Mar 15, 2013 1:30 pm
Location: UWA Oceans Institute

Re: ERROR: Abnormal termination: NetCDF OUTPUT.

#2 Unread post by moritz.wandres »

I've got it to work now. There seems to be some sort of character limit to the input files? I can run by setting
FRCNAME == SWAROMS_forcing/wind_swaroms_hourly_1.nc|
SWAROMS_forcing/wind_swaroms_hourly_2.nc|
SWAROMS_forcing/wind_swaroms_hourly_3.nc|
SWAROMS_forcing/wind_swaroms_hourly_4.nc|
SWAROMS_forcing/wind_swaroms_hourly_5.nc|
SWAROMS_forcing/wind_swaroms_hourly_6.nc|
SWAROMS_forcing/wind_swaroms_hourly_7.nc|
SWAROMS_forcing/wind_swaroms_hourly_8.nc|
SWAROMS_forcing/wind_swaroms_hourly_9.nc|
SWAROMS_forcing/wind_swaroms_hourly_10.nc|
SWAROMS_forcing/wind_swaroms_hourly_11.nc|
SWAROMS_forcing/wind_swaroms_hourly_12.nc|
SWAROMS_forcing/wind_swaroms_hourly_13.nc|
SWAROMS_forcing/wind_swaroms_hourly_14.nc|
SWAROMS_forcing/wind_swaroms_hourly_15.nc|
SWAROMS_forcing/wind_swaroms_hourly_16.nc|
SWAROMS_forcing/wind_swaroms_hourly_17.nc|
SWAROMS_forcing/wind_swaroms_hourly_18.nc|
SWAROMS_forcing/wind_swaroms_hourly_19.nc|
SWAROMS_forcing/wind_swaroms_hourly_20.nc|
SWAROMS_forcing/wind_swaroms_hourly_21.nc|
SWAROMS_forcing/wind_swaroms_hourly_22.nc|
SWAROMS_forcing/wind_swaroms_hourly_23.nc|
SWAROMS_forcing/wind_swaroms_hourly_24.nc\
but not
FRCNAME == /group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_1.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_2.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_3.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_4.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_5.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_6.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_7.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_8.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_9.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_10.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_11.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_12.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_13.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_14.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_15.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_16.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_17.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_18.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_19.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_20.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_21.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_22.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_23.nc|
/group/director967/mwandres/ROMS/SWAROMS/Run_01/SWAROMS_forcing/wind_swaroms_hourly_24.nc\
even though both are referring to the same path. This is only the case for my wind forcing as it consists of 24 separate files. All my other input files can be set using the whole path name. I don't really understand why it gives the error when trying to write into the output rather than when reading the input. Anyone?

User avatar
kate
Posts: 4088
Joined: Wed Jul 02, 2003 5:29 pm
Location: CFOS/UAF, USA

Re: ERROR: Abnormal termination: NetCDF OUTPUT.

#3 Unread post by kate »

Actually, there is a limit. If you look at def_info.F, there is:

Code: Select all

            CALL join_string (FRC(i,ng)%files, FRC(i,ng)%Nfiles,        &
     &                        string, lstr)
Looking above, there is:

Code: Select all

      character (len=1024) :: string

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