Search found 105 matches

by lalvarez
Tue Dec 03, 2019 4:18 pm
Forum: ROMS Trivia
Topic: u,v high resolution database
Replies: 7
Views: 1038

Re: u,v high resolution database

Hello to All

Thanks a lot for your suggestions

Have a nice day
by lalvarez
Sat Nov 30, 2019 3:42 pm
Forum: ROMS Trivia
Topic: u,v high resolution database
Replies: 7
Views: 1038

Re: u,v high resolution database

Hello Kate

The northwest Mexico including the Gulf of California and the years 2005, 2006, 2009 and 2010
This Is what i'm looking foto

Thanks a lot
by lalvarez
Fri Nov 29, 2019 3:54 pm
Forum: ROMS Trivia
Topic: u,v high resolution database
Replies: 7
Views: 1038

Re: u,v high resolution database

Hello Kate
I am looking for a higher resolution than hycom, let say some 4x4 km or 6x6 km

Thanks un advance
by lalvarez
Thu Nov 28, 2019 9:06 pm
Forum: ROMS Trivia
Topic: u,v high resolution database
Replies: 7
Views: 1038

u,v high resolution database

Hello to All

Are there databases of high resolution surface (u,v); lets say between 1/25º and 1/12º?

Thanks in advance
by lalvarez
Mon May 13, 2019 2:39 pm
Forum: ROMS Problems
Topic: Segmentation fault with floats
Replies: 6
Views: 837

Re: Segmentation fault with floats

Hello Hernan

Actually the model runs ok until the day it has to deploy the floats, I'll try to set fewer floats I guess that's my problem

Thank alot
by lalvarez
Sat May 11, 2019 6:23 pm
Forum: ROMS Problems
Topic: Segmentation fault with floats
Replies: 6
Views: 837

Re: Segmentation fault with floats

Hello Kate

Thanks a lot for your ASAP answer, I'm working on it

Have a nice day
by lalvarez
Wed May 08, 2019 3:46 pm
Forum: ROMS Problems
Topic: Segmentation fault with floats
Replies: 6
Views: 837

Segmentation fault with floats

Hello to All I had a problem with the floats in my run, it is a short time 40 days and a release floats 10, 15 and 20 days after the model starts, here is what I got. The total number of floats are 8400. Program received signal SIGSEGV: Segmentation fault - invalid memory reference. Backtrace for th...
by lalvarez
Tue Dec 04, 2018 12:13 pm
Forum: ROMS Installation
Topic: test case
Replies: 4
Views: 1296

Re: test case

Hello

You need to do the boundary files of your domain
by lalvarez
Mon Nov 26, 2018 1:06 pm
Forum: ROMS Discussion
Topic: out-of-memory problem in .nc file while pre-process
Replies: 2
Views: 568

Re: out-of-memory problem in .nc file while pre-process

Hello there

You have to look at your files timelength, or how you set the order in your *.in file configuration
by lalvarez
Wed Jun 20, 2018 3:17 pm
Forum: ROMS Tools and Techniques
Topic: About HYCOM data download
Replies: 1
Views: 1046

About HYCOM data download

Hello to all I would like to know if Anyone of You have tried to download HYCOM data after 2012, specifically the GLBu0.08/expt_91.1 and GLBu0.08/91.2 experiments? I have this script (file attached) that works good for the GLBu0.08/19.1, but cannot make it work for the 91.1 & 91.2 experiments Thanks...
by lalvarez
Sun May 06, 2018 10:43 pm
Forum: ROMS Tools and Techniques
Topic: Derivatives of U and V in curvilinear coordinates
Replies: 2
Views: 958

Re: Derivatives of U and V in curvilinear coordinates

Hello fcampos You have this uom(i,:,:) = 2*squeeze(Hu(i,:,:))./(pm(:,1:L)+pm(:,2:Lp)); uon(i,:,:) = 2*squeeze(Hu(i,:,:))./(pn(:,1:L)+pn(:,2:Lp)); von(i,:,:) = 2*squeeze(Hv(i,:,:))./(pn(1:M,:)+pn(2:Mp,:)); vom(i,:,:) = 2*squeeze(Hv(i,:,:))./(pm(1:M,:)+pm(2:Mp,:)); how about uom(i,:,:) = squeeze(2*((H...
by lalvarez
Sat May 05, 2018 5:09 am
Forum: ROMS Discussion
Topic: Perfect restart
Replies: 2
Views: 793

Re: Perfect restart

Scarlett hello

The modelo cannot be paused, what you can do is to restart the model with the last record in your restart nc file

Have a nice day
by lalvarez
Mon Apr 30, 2018 2:10 am
Forum: ROMS Problems
Topic: problems with upwelling example
Replies: 2
Views: 815

Re: problems with upwelling example

Hello fcampos

Are you working on windows or linux?

I had this kind of problems once, look for lalvarez in the Search for: window on top

Have a nice day
by lalvarez
Wed Jan 17, 2018 2:39 pm
Forum: ROMS Discussion
Topic: Error in make whith analytic sea surface height actived
Replies: 8
Views: 11393

Re: Error in make whith analytic sea surface height actived

Hola Scarlett

What are your OBC's?
Are you using a sponge layer?
Once ago Kate suggested me to use RadNud and it worked goog for my domain.
Later on i'll send you my *.in as an example

Have a nice day
by lalvarez
Thu Jun 22, 2017 2:11 pm
Forum: ROMS Problems
Topic: Problems with a leap-year (1996)
Replies: 5
Views: 2317

Re: Problems with a leap-year (1996)

Hello M.Hadfield

I have some questions about the ROMS updating

Would there be any trouble with things I have done or perhaps with the configuration I already have?

Thanks in advance
by lalvarez
Wed Jun 21, 2017 3:04 pm
Forum: ROMS Problems
Topic: Problems with a leap-year (1996)
Replies: 5
Views: 2317

Re: Problems with a leap-year (1996)

Hello M.Hadfield

That' s what i was looking for

Thanks a lot
by lalvarez
Mon Jun 19, 2017 4:52 am
Forum: ROMS Problems
Topic: Problems with a leap-year (1996)
Replies: 5
Views: 2317

Problems with a leap-year (1996)

Hello to All I´m trying to run the model from july 1996 to march 31 1997, but there is some trouble with this 1996 leap-year, the model blows up on the dec 31(the 366 day} and cannot go through to 1997 Is there any how to solve this situation? I saw a few weeks ago that Dr. Arango post a tracktickt ...
by lalvarez
Fri Jun 09, 2017 4:42 pm
Forum: ROMS Discussion
Topic: Blowing-up: Saving latest model state into RESTART file
Replies: 6
Views: 1191

Re: Blowing-up: Saving latest model state into RESTART file

Hello Scarlett You should also take a look at this Maximum grid stiffness ratios: rx0 = 9.963796E-01 (Beckmann and Haidvogel) rx1 = 1.931157E+01 (Haney) It is greater than 0.4, perhaps you need to smooth your grid Can you share a map or figure of your area? Saluditos
by lalvarez
Wed Apr 05, 2017 2:33 pm
Forum: ROMS Problems
Topic: Cannot read wind file
Replies: 4
Views: 1538

Re: Cannot read wind file

Good morning Kate

Thanks a lot for your suggestions I´ll check them and see what happen

Have a nice day
by lalvarez
Tue Apr 04, 2017 5:41 pm
Forum: ROMS Problems
Topic: Cannot read wind file
Replies: 4
Views: 1538

Re: Cannot read wind file

Hello Kate Thanks for your replay. So Do I have to include the ANA_SMFLUX in my *.h file, such as? /* ** svn $Id: upwelling.h 323 2009-03-06 23:58:50Z arango $ ******************************************************************************* ** Copyright (c) 2002-2009 The ROMS/TOMS Group ** ** License...
by lalvarez
Tue Apr 04, 2017 2:35 pm
Forum: ROMS Problems
Topic: Cannot read wind file
Replies: 4
Views: 1538

Cannot read wind file

Hello to All
I'm having a problem running the model

When I compile there is no error but when I run the model I get an error which is in the Out01.txt file I attach in here

Can Anyone give me a hit on this, why the wind file can not be open?

Thank in advance and have a nice day
by lalvarez
Wed Mar 08, 2017 4:00 pm
Forum: ROMS Problems
Topic: Error when running ./oceanO
Replies: 4
Views: 1966

Re: Error when running ./oceanO

Hello Kate

I found what the problem was in my floats file, after the latitude data comes the depth of the floats and one (-) was absent. When corrected it has run smothlly

Thanks a lot
by lalvarez
Fri Mar 03, 2017 8:59 pm
Forum: ROMS Problems
Topic: Error when running ./oceanO
Replies: 4
Views: 1966

Re: Error when running ./oceanO

Hello Kate t

Thanks a lot for your answer, i've try what You suggest and got this

At line 117 of file read_fltpar.f90
Fortran runtime error: Index '602' of dimension 1 of array 'fcoor' above upper bound of 601


What must I check now, shall I check my Floats File?

Have a nice weekend
by lalvarez
Fri Mar 03, 2017 5:18 pm
Forum: ROMS Problems
Topic: Error when running ./oceanO
Replies: 4
Views: 1966

Error when running ./oceanO

Hello there I'm having a problem that has never shown before and it goes like this lalvarez@lalvarez-H61MLV ~/roms/Projects/Leo $ ./oceanO < leo.in > Out16.txt *** Error in `./oceanO': malloc(): memory corruption: 0x0000000005a12490 *** Program received signal SIGABRT: Process abort signal. Backtrac...
by lalvarez
Sat Oct 01, 2016 7:47 pm
Forum: ROMS Problems
Topic: Help on installing NETCDF/HDF5/ROMS
Replies: 10
Views: 5479

Re: Help on installing NETCDF/HDF5/ROMS

Hey hello i'm back Well yes i'm using gfortran to run ROMS, but did not knew that ifort makes ROMS go faster. My system information is attached in the png file. I think I successfully install the netCDF packages or at least I guess so. I have not work on the tilling issue yet. Thanks in advance & ha...
by lalvarez
Fri Sep 23, 2016 11:54 pm
Forum: ROMS Problems
Topic: Help on installing NETCDF/HDF5/ROMS
Replies: 10
Views: 5479

Re: Help on installing NETCDF/HDF5/ROMS

Hello I did all the stuff and some more and finally i could compile the upwelling case, but when i run it i get the following error: Model Input Parameters: ROMS/TOMS version 3.7 Friday - September 23, 2016 - 5:29:12 PM ----------------------------------------------------------------------------- Wi...
by lalvarez
Fri Sep 23, 2016 1:21 am
Forum: ROMS Problems
Topic: Help on installing NETCDF/HDF5/ROMS
Replies: 10
Views: 5479

Re: Help on installing NETCDF/HDF5/ROMS

Hello Shchepet I have follow the directions in the http://....README.compiling_sequence, but when i got to the udunits installation I got this error lab-ocean@labocean-OptiPlex-740-Enhanced ~/netcdf/udunits-2.2.20 $ sudo ./configure --prefix=/opt/netcdf-4.4.1 checking for a BSD-compatible install......
by lalvarez
Thu Sep 22, 2016 3:22 pm
Forum: ROMS Problems
Topic: Help on installing NETCDF/HDF5/ROMS
Replies: 10
Views: 5479

Re: Help on installing NETCDF/HDF5/ROMS

Hi Shchepet

Thanks a lot for the guidance

Today i´m going to install all the stuff

Have a nice day
by lalvarez
Wed Sep 21, 2016 4:50 am
Forum: ROMS Problems
Topic: Help on installing NETCDF/HDF5/ROMS
Replies: 10
Views: 5479

Re: Help on installing NETCDF/HDF5/ROMS

Hello Kate

Thanks a lot, i'll follow that order

Have a nice day
by lalvarez
Tue Sep 20, 2016 6:31 pm
Forum: ROMS Problems
Topic: Help on installing NETCDF/HDF5/ROMS
Replies: 10
Views: 5479

Help on installing NETCDF/HDF5/ROMS

Hello to all

I'm installing ROMS once again on a new computer, but many things have change and i need some help.
Can anyone give me a hand on how to do it?

All the stuff, NETCDF for C & fortran, CPPFLAGS for C & Fortran, HDF5, etc

I'm working on linux with a 64 bit machine

Thanks in advance
by lalvarez
Sat Jun 11, 2016 1:30 pm
Forum: ROMS Usage
Topic: MAIN: Abnormal termination: BLOWUP.
Replies: 18
Views: 6490

Re: MAIN: Abnormal termination: BLOWUP.

Hello

I guess you may check your rx0 too, it is a bit greater than 0.4 and as suggested rx0<0.4


Have a nice day
by lalvarez
Tue May 24, 2016 4:26 pm
Forum: ROMS Discussion
Topic: Blowing up problem
Replies: 12
Views: 3625

Re: Blowing up problem

Hello to All I'm having problems running the model, it blows up at the very start, as says inhere before I have change the DT=120 & NDTFAST=20 to DT=90 & NDTFAST=15 and get the same. For DT=120 & NDTFAST=20, Cw seems to be the problem on the top (surface) STEP Day HH:MM:SS KINETIC_ENRG POTEN_ENRG TO...
by lalvarez
Thu May 05, 2016 2:58 pm
Forum: ROMS Tools and Techniques
Topic: Help about boundaries sponge layer
Replies: 13
Views: 8052

Re: Help about boundaries sponge layer

Hello Kate

Actually there´s no reason I just had the doubt

Thanks a lot
by lalvarez
Wed May 04, 2016 2:55 pm
Forum: ROMS Tools and Techniques
Topic: Help about boundaries sponge layer
Replies: 13
Views: 8052

Re: Help about boundaries sponge layer

Hello Kate We have finally change to HYCOM daily data for the forcing and OBC´s, but I still have one question about a suggestion of yours. We are doing a 455 days run and my question is, How do I must handle the TNUDG, ZNUDG, M2NUDG, M3NUDG and OBCFAC parameters in order to adjust them to my 455 da...
by lalvarez
Tue Nov 24, 2015 2:54 pm
Forum: User Applications
Topic: DSTART, TIDE_START & TIME_REF in the *.in file
Replies: 2
Views: 3426

Re: DSTART, TIDE_START & TIME_REF in the *.in file

Hi Miguel

Thanks a lot for your replay, i'll take that in account

Have a nice day
by lalvarez
Sat Nov 07, 2015 5:24 pm
Forum: ROMS Discussion
Topic: Blowing up problem
Replies: 12
Views: 3625

Re: Blowing up problem

Hello Kate

I´m using linux-gfortran

Thanks for your replay, how small or big the Courant number shall be?
by lalvarez
Fri Nov 06, 2015 8:00 pm
Forum: ROMS Discussion
Topic: Blowing up problem
Replies: 12
Views: 3625

Re: Blowing up problem

Hello j.throutlocust

Could you please remind me, where in the compilation procces the optimization -O3, -O2 is handle?

I'll try that

Any way I attach here my *.txt run with the NINFO == 1

Any help will be welcome
by lalvarez
Wed Nov 04, 2015 7:58 pm
Forum: ROMS Discussion
Topic: Blowing up problem
Replies: 12
Views: 3625

Re: Blowing up problem

Hello I'm having the same problem the model blows up at start, i'm using this timing NTIMES == 349020 DT == 120 NDTFAST == 20 NRST == 3600 NSTA == 60 NFLT == 30 NINFO == 60 NHIS == 720 NAVG == 3600 NDIA == 720 and get the same as mmichelet STEP Day HH:MM:SS KINETIC_ENRG POTEN_ENRG TOTAL_ENRG NET_VOL...
by lalvarez
Tue Oct 20, 2015 2:25 pm
Forum: ROMS Tools and Techniques
Topic: Help about boundaries sponge layer
Replies: 13
Views: 8052

Re: Help about boundaries sponge layer

Hello Kate

Thanks for your answer and Yes we are working on 64 bits.

I will try making my files smaller, i'll make a 1 year sequence and try making a 6, 4 and 3 months files and see what happen

Have a nice day
by lalvarez
Thu Oct 15, 2015 2:33 pm
Forum: ROMS Tools and Techniques
Topic: Help about boundaries sponge layer
Replies: 13
Views: 8052

Re: Help about boundaries sponge layer

Hello Kate We have not try the HYCOM info, I'm sure it must have better results as you say. By now we are facing another problem, we expand our domain fron 500km to 1000km offshore and when making the climatological files, it seems the _clim.nc file gets too big (>3 G) and can't be handeled. My ques...
by lalvarez
Thu Oct 01, 2015 6:49 pm
Forum: ROMS Tools and Techniques
Topic: Help about boundaries sponge layer
Replies: 13
Views: 8052

Re: Help about boundaries sponge layer

Hello Kate Thanks a lot for your guiding, i´m running my domain with values you posted for the LBC´s. I still have some wierd things happening on my boundaries, specially on the west one, I hope tomorrow will post some graphic results about daily salinity, temperature and velocities. Well i´m forcin...
by lalvarez
Thu Oct 01, 2015 6:40 pm
Forum: ROMS Tools and Techniques
Topic: Help about boundaries sponge layer
Replies: 13
Views: 8052

Re: Help about boundaries sponge layer

Hola Miguel

Thanks a lot for those referencies i´m reading them.

Have a nice day my Friend
by lalvarez
Sat Sep 26, 2015 7:45 pm
Forum: ROMS Tools and Techniques
Topic: Help about boundaries sponge layer
Replies: 13
Views: 8052

Re: Help about boundaries sponge layer

Hello Kate Thanks a lot for your answer, please let me understand it slowly; this is how i have my LBC now ! W S E N ! e o a o ! s u s r ! t t t t ! h h ! ! 1 2 3 4 LBC(isFsur) == Cha Cha Clo Cha ! free-surface LBC(isUbar) == Fla Fla Clo Fla ! 2D U-momentum LBC(isVbar) == Fla Fla Clo Fla ! 2D V-mome...
by lalvarez
Thu Sep 24, 2015 5:41 pm
Forum: ROMS Tools and Techniques
Topic: Help about boundaries sponge layer
Replies: 13
Views: 8052

Help about boundaries sponge layer

Hello to All I have got some results from my modeling in the California Current, but as you may see (attached figures are monthly mean surface velocities for january and may 1996), I still have some problems with my north, south & west boundaries, so i'm looking for help in order to reduce this prob...
by lalvarez
Mon Sep 14, 2015 2:20 pm
Forum: ROMS Installation
Topic: Problems in ROMS installation
Replies: 7
Views: 3545

Re: Problems in ROMS installation

Hello Novtov

What is the system you are working in, linux or windows?

Can you tell?

Have a nice day!! :lol:
by lalvarez
Tue Sep 01, 2015 4:50 pm
Forum: User Applications
Topic: DSTART, TIDE_START & TIME_REF in the *.in file
Replies: 2
Views: 3426

DSTART, TIDE_START & TIME_REF in the *.in file

Hello to All I have a doubt about DSTART, TIDE_START & TIME_REF. My forcing files date start on january 1-1996 and end on april 30-1997, and I want to run the model from may 1-1996 to april 30-1997. If my TIME_REF = 19960101.0, then what must be the correct assigments for DSTART and TIDE_START? DSTA...
by lalvarez
Mon Aug 24, 2015 3:04 pm
Forum: ROMS Discussion
Topic: Surface heat retention, year-round fake "upwelling"
Replies: 21
Views: 9316

Re: Surface heat retention, year-round fake "upwelling"

Hello I´m not quite wise at all. Are you calculating for the 2-D eq´s each second, right? 97822080 ntimes Number of timesteps for 3-D equations. 30.000 dt Timestep size (s) for 3-D equations. 30 ndtfast Number of timesteps for 2-D equations between each 3D timestep. Could be that a problem?
by lalvarez
Tue Aug 04, 2015 6:26 pm
Forum: ROMS Problems
Topic: ROMS/TOMS - Blows up ................ exit_flag: 1
Replies: 2
Views: 2667

Re: ROMS/TOMS - Blows up ................ exit_flag: 1

Hello

I guess you need to smooth your grid rx0 is too big
by lalvarez
Thu Jul 09, 2015 3:52 pm
Forum: User Applications
Topic: About Float Files
Replies: 3
Views: 2682

Re: About Float Files

Hello Kate Well I want to simulate particles dispersal from june 1996 through june 1997. One batch starts in june 1996 and drift for 240 days, and the other start in feb-97 and moves 30 days only. What I want to know is if I can make two floats.in files (i.e. Leofloats1.in & Leofloats2.in), one for ...
by lalvarez
Wed Jul 08, 2015 8:58 pm
Forum: User Applications
Topic: About Float Files
Replies: 3
Views: 2682

About Float Files

Hello to All

Can I have 2 or 3 float files in the same ROMS run?

Thanks in advance
by lalvarez
Mon Jun 08, 2015 6:46 pm
Forum: ROMS Problems
Topic: On restart, ROMS cannot see 3rd file in the multi-file list
Replies: 3
Views: 2051

Re: On restart, ROMS cannot see 3rd file in the multi-file l

Hello

Perhaps you could also shorten your Total number of iterations to adjust that 0.750 difference

Have a nice day
by lalvarez
Thu May 21, 2015 7:16 pm
Forum: ROMS Installation
Topic: Roms installation Steps
Replies: 49
Views: 16714

Re: Roms installation Steps

Kate hello

I tryed the sudo make install and it did fine

I started up on linux yesterday, perhaps that's why cannot catch some stuff easily

Thanks a lot for Your fast replay and have a nice day :D
by lalvarez
Thu May 21, 2015 6:52 pm
Forum: ROMS Installation
Topic: Roms installation Steps
Replies: 49
Views: 16714

Re: Roms installation Steps

Hello to All I changed from Windows to Linux Mint 17.1 "Rebecca" and I'm trying to install the Netcdf-4.3.3.1. I have checked up and isntall the: Perl, diffutils, gcc-core, gcc c++, gcc gfortran, make, subversion, wget, bison, doxigen, curl, udunits, hdf5, libhdf5. I move into my NETCDF/netcdf-4.3.3...
by lalvarez
Tue Apr 28, 2015 7:01 pm
Forum: ROMS Tools and Techniques
Topic: Preprocesing tools problem in v2rho_2d.m
Replies: 0
Views: 1930

Preprocesing tools problem in v2rho_2d.m

Hello to All I´m having this problem while computing geostrophic currents in the v2rho_2d.m routine Compute geostrophic currents time index: 1 Attempted to access var_rho(2,:); index out of bounds because size(var_rho)=[1,0]. Error in v2rho_2d (line 37) var_rho(1,:)=var_rho(2,:); Any help is welcome...
by lalvarez
Wed Apr 15, 2015 2:56 pm
Forum: ROMS Tools and Techniques
Topic: poroblem with the seagrid "mex filesconfiguration in matlab
Replies: 1
Views: 2077

Re: poroblem with the seagrid "mex filesconfiguration in mat

Hello I looked at my mex.pl file to see what could be wrong written in it and i found this use mexsetup; use mexutils; require "shellwords.pl"; # Found in $MATLAB/sys/perl/win32/lib # This is necessary to break up the text in # the file into shell arguments. This is used # to support the @<rspfile> ...
by lalvarez
Tue Apr 14, 2015 4:47 pm
Forum: ROMS Tools and Techniques
Topic: poroblem with the seagrid "mex filesconfiguration in matlab
Replies: 1
Views: 2077

poroblem with the seagrid "mex filesconfiguration in matlab

Hello to All I´m trying to install the seagrid mex files in matlab and i do as follows: >> make_seagrid_mex Building with 'Microsoft Windows SDK 7.1 (C)'. MEX completed successfully. wait for the figure to finish plotting, then hit any key to continue and a figure is shown (attached file *.jpg), the...
by lalvarez
Thu Mar 26, 2015 12:59 am
Forum: ROMS Installation
Topic: Problems compiling Upwelling Case
Replies: 6
Views: 4357

Re: Problems compiling Upwelling Case

Hello Mark

I follow what you point in your latest replay, i look for my fstab file and found it in C:/cygwin/etc and here i attach a copy of it; please let me know if what i did is correct.

Also there is a C:/cygwin/etc/fstab.d folder which is empty.

Thanks in advance

Leo
by lalvarez
Wed Mar 25, 2015 8:35 pm
Forum: ROMS Installation
Topic: Problems compiling Upwelling Case
Replies: 6
Views: 4357

Re: Problems compiling Upwelling Case

Hello Detraceyb Thanks a lot for your replay, i have already solve that problem and i could change my build.bsh to unix. What i´m facing now is the Error 127 when trying to compile ./build.bash . This is what i got from my nf-config --all $ nf-config --all This netCDF-Fortran 4.4.2 has been built wi...
by lalvarez
Tue Mar 24, 2015 7:54 pm
Forum: ROMS Installation
Topic: Problems compiling Upwelling Case
Replies: 6
Views: 4357

Problems compiling Upwelling Case

Hello to All I´m trying to run ROMS via cygwin in a windows 7 (32bit) environment, I have downloaded and install successfully the NETCDF-4.3.3.1 & NETCDF-Fortran-4.4.2 Libraries. Then i copy the upwelling.h & build.bash files to Upwelling folder, i change the build.bash and the CYGWIN-gfortran.mk fi...
by lalvarez
Thu Mar 19, 2015 1:31 am
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Mark hello In deed those packages only change their names from one version to another as you say, from: gcc4, gcc4-core, gcc4-c++ and gcc4-fortran to: gcc, gcc-core gcc-c++ and gcc-fortran Those last ones are the ones i choose while installing cygwin and all the other you told me at the begining of ...
by lalvarez
Wed Mar 18, 2015 4:15 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Hello Kate & Mark I have updated my computer and i´m istalling once again via cygwin, well while doing so, i have found that some of the utilities are obsolete such as: gcc4, gcc4-core, gcc4-c++ andgcc4-fortran Do You know which are the new ones that sustitute these old ones? Thanks in advance Leo
by lalvarez
Wed Feb 18, 2015 4:11 pm
Forum: User Applications
Topic: Segmentation fault at the start
Replies: 7
Views: 4347

Re: Segmentation fault at the start

Hello Mike Thanks for your comment, acrually we have solve that problem, what we are facing now iare the DT and dt, time steps. We are running on a large domain (figure atteched) and we can not fine aa adecuate pair of the to make Roms run, it blows up at the very start, here i attach the file too (...
by lalvarez
Mon Feb 16, 2015 7:59 pm
Forum: User Applications
Topic: Segmentation fault at the start
Replies: 7
Views: 4347

Segmentation fault at the start

Hello All I'm having a problem by the time i try to run ROMS, this is what i got ggv@SNI01 ~/roms/Projects/Leo $ ./oceanO <leo.in >out00.txt Program received signal SIGSEGV: Segmentation fault - invalid memory reference. Backtrace for this error: #0 0x7FACD9F6A7D7 #1 0x7FACD9F6ADDE #2 0x7FACD96ACD3F...
by lalvarez
Thu Feb 12, 2015 1:11 am
Forum: ROMS Usage
Topic: About the floats Input Parameters
Replies: 0
Views: 1342

About the floats Input Parameters

Hello to All I´m preparing a file to run some floats in the California Current from Point Conception CA to Todos Santos Baja (almost the tip of it). I choose the: Ftype = 1, 3D Lagrangian floats For instance Fx0 and Fy0 will be lon, lat positions, and i´m going to set Fz0 = 10, here comes my questio...
by lalvarez
Wed Jul 30, 2014 4:21 pm
Forum: ROMS Installation
Topic: A blank slate guide to installing ROMS on Ubuntu Lucid Lynx
Replies: 8
Views: 7358

Re: A blank slate guide to installing ROMS on Ubuntu Lucid L

Hello to All I have contact personaly with Andres Sepulveda of LiveROMS and he is going to guide me to install LiveROMS, as He has told me it works with ROMS_AGRIF and there is no problem if i install ROMS_Rutger also, i just need to set them in different directories. What i`m looking for is some he...
by lalvarez
Mon Jul 28, 2014 7:19 pm
Forum: ROMS Installation
Topic: A blank slate guide to installing ROMS on Ubuntu Lucid Lynx
Replies: 8
Views: 7358

Re: A blank slate guide to installing ROMS on Ubuntu Lucid L

Hello Kate & CVL Let me give a little explanation of what i have found, looking at your comentaries. First, i have the Netcdf-4.3.2 directory at the same level ROMS directory is, that is /home/leonardo/ Netcdf_4.3.2 & ROMS are in here Is that what is expected or not? Then after the: leonardo@leonard...
by lalvarez
Fri Jul 25, 2014 5:55 pm
Forum: ROMS Installation
Topic: A blank slate guide to installing ROMS on Ubuntu Lucid Lynx
Replies: 8
Views: 7358

Re: A blank slate guide to installing ROMS on Ubuntu Lucid L

Hello CVL I'm following your instructions to install ROMS and i have install the gfortran & netcdf libraries and download the ROMS code succesfully, when i get to the fourth step i get this message leonardo@leonardo-PC:~$ cd ROMS leonardo@leonardo-PC:~/ROMS$ sed -i_release "s#NETCDF_INCDIR ?= /usr/l...
by lalvarez
Thu Jul 10, 2014 7:37 pm
Forum: User Applications
Topic: LTRANS installing questions
Replies: 1
Views: 2114

LTRANS installing questions

Hello to All It is perhaps the most silly questions, but anyway here i go I´m trying to install LTRAN and i follow the instrutions on the User´s Guide, I go to http://www.unidata.ucar.edu/software/netcdf/binaries.html and found the Windows.zip file that contains the files (netcdf.dll, netcdf.ini and...
by lalvarez
Thu Dec 12, 2013 8:28 am
Forum: ROMS Trivia
Topic: About the History of Ocean Modeling
Replies: 5
Views: 3822

About the History of Ocean Modeling

Hello Everyone I have been asked for a "homework" and i´m looking for books or publications (PDF format) in which I could find the "History of Ocean Modeling", When and where did ocean modeling start? Who is considered the father of the ocean modeling? How models have been developed? or the evolutio...
by lalvarez
Fri Jul 05, 2013 2:09 am
Forum: ROMS Trivia
Topic: What´s the difference between Modeling and Simulating
Replies: 10
Views: 5279

Re: What´s the difference between Modeling and Simulating

Hello Nganju

I have visited the site of Eric Winsberg and i found some interesting readings

Thanks a lot for the information :)
by lalvarez
Sun Jun 23, 2013 5:42 am
Forum: ROMS Trivia
Topic: What´s the difference between Modeling and Simulating
Replies: 10
Views: 5279

Re: What´s the difference between Modeling and Simulating

Hello to All Thanks a lot for your answers. In deed, what is undestood as Model in physical oceanography has a very different meanings to other sciences. I agree with Kate, there is a clasification given by Haeffner (2005, Modelling Biological Systems -book)about models, from the verbal model (spoke...
by lalvarez
Sat Jun 15, 2013 8:30 pm
Forum: ROMS Trivia
Topic: What´s the difference between Modeling and Simulating
Replies: 10
Views: 5279

What´s the difference between Modeling and Simulating

Hello Everybody "Modeling vs. Simulation" Can anyone help me to clarify these two terms? I´m working with lobster larvae dispersion on the west coast of Baja Peninsula with ROMS, but for some of my advisors what i´m doing is a simulation and for the others it´s modeling. So i need a clear definition...
by lalvarez
Wed Mar 20, 2013 7:32 pm
Forum: ROMS Problems
Topic: Problems running "seagrid" in matlab Version R2012a
Replies: 0
Views: 1129

Problems running "seagrid" in matlab Version R2012a

Hello to All I´m having problems running the seagrid in matlab, when I first call it, I get this: >> seagrid ## Unable to locate Mex-files. Please install ## "mexrect", "mexsepeli", and "mexinside", ## then adjust your Matlab path accordingly. I get the window to input the coastline file, the bathim...
by lalvarez
Wed Feb 27, 2013 5:21 pm
Forum: ROMS Installation
Topic: Question about ROMS downloading
Replies: 0
Views: 1202

Question about ROMS downloading

Hello to All Can anyone help me on this, may be trivial. I got this message when I download ROMS $ svn checkout --username lalvarez https://www.myroms.org/svn/src/trunk Error validando el certificado del servidor de 'https://www.myroms.org:443': - El certificado no fue emitido por una autoridad marc...
by lalvarez
Fri Feb 08, 2013 5:38 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Hello robjenkinsiii I´m enclosing here my build.bash file, You have to look where the shaded rows are, perhaps that´s the problem, as Mark says You could begin by reading all the posts in this thread. The linker is failing to find a netCDF Fortran routine, probably because the linker command is lack...
by lalvarez
Fri Feb 08, 2013 5:26 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Hello robjenkinsiii Just as Mark says, for the netCDF installing follow this posts and pay attention to the Well I wrote to UNICAR and this is what I get, an extra command must be include in the configure, so insted of: nice ./configure --prefix=/usr/local --disable-shared --enable-netcdf-4 --enable...
by lalvarez
Thu Jan 31, 2013 6:00 am
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Mark

Thanks for that tip, i´m going to update my laptop ROMS!!

Also I´ve finally install ROMS all the way, thanks for Your help

Greetings
by lalvarez
Fri Jan 25, 2013 4:19 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Kate and Hernan

Thank You for you advice, i´m going to check that out and be more careful.
Any good site for basic unix learning?

Leo
by lalvarez
Thu Jan 24, 2013 8:26 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Hello Mark I´m a little confuse, jaja Here is the build.bash script of mine as I already have it, in here I have highlighted the export NC_CONFIG= lines I have found. Are those lines the ones that You suggest to change for: export NC_CONFIG=nf-config or export NC_CONFIG=/usr/local/bin/nf-config ? Al...
by lalvarez
Tue Jan 22, 2013 6:12 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Hello Mark & Chris Well I did not try the nf-config for the nc-config, as You suggested. In here I include my $nf-config --all, which is: $ nf-config --all This netCDF-Fortran 4.2 has been built with the following features: --cc -> gcc --cflags -> -I/usr/local/include -I/usr/local/include --libs -> ...
by lalvarez
Thu Jan 17, 2013 6:44 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Hello Mark Yes I´m using the netcdf-4.2.1.1 version and the netcdf-fortran-4.2 version. Anyway I guess my mistake is in here, I configured netcdf-4.2.1.1 with this: ./configure --prefix=/usr/local --disable-shared --enable-netcdf-4 --enable-dap --disable-dap-remote-tests and configured netcdf-fortra...
by lalvarez
Wed Jan 16, 2013 5:07 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Hello Kate & Mark

Here it is, the entire output of the Compile ./build.bash
Hope You can help me

Thanks in advance
by lalvarez
Tue Jan 15, 2013 7:24 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Just for the record I once asked for this error: ================================================ 1 of 8 tests failed Please report to support-netcdf@unidata.ucar.edu ================================================ Makefile:596: recipe for target `check-TESTS' failed make[4]: *** [check-TESTS] Erro...
by lalvarez
Fri Jan 11, 2013 4:00 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Hello Kate Here is the line before final link failed: Invalid operation , I insert the whole paragraph just in case /usr/lib/gcc/i686-pc-cygwin/4.5.3/../../../../i686-pc-cygwin/bin/ld: /home/Usuar io/roms/Projects/Upwelling/Build/libUTIL.a(lbc.o): bad reloc address 0x48c in se ction `.rdata' /usr/li...
by lalvarez
Thu Jan 10, 2013 6:37 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Well the compiling was running until I got this message and the process stops /usr/lib/gcc/i686-pc-cygwin/4.5.3/../../../../i686-pc-cygwin/bin/ld: final link failed: Invalid operation collect2: ld devolvió el estado de salida 1 make: *** [/home/Usuario/roms/Projects/Upwelling/oceanS.exe] Error 1 Any...
by lalvarez
Thu Jan 10, 2013 6:23 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Kate

It is compiling now, the GNUmake 3.81-2 version works Ok!

Thanks a lot

Leo
by lalvarez
Thu Jan 10, 2013 5:45 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Hello Kate

I´m updating the cygwin, and I had installed the 3.82.90-1 version of the GNU make, I´m going to change it for the 3.81-2 version and try to Compile ROMS again

Thanks a lot

Leo
by lalvarez
Thu Jan 10, 2013 4:54 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Well I have run the dos2unix ./build.bash command and I get dos2unix: converting file ./build.bash to unix format ... (traslation) , so it is Ok! and then I run the ./build.bash command only and I get this message $ ./build.bash makefile:32: *** This makefile requires one of GNU make version 3.80 3....
by lalvarez
Thu Jan 10, 2013 4:12 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Re: Compile ROMS problem via cygwin

Hello Mark Thanks for Your replay Do I have to run the whole dos2unix ./build.bash command or only the ./build.bash command? One more thing, I have ROMS installed via cygwin on windows with netcdf-4.1.1 version in a laptop. How can I update the netcdf on this other computer? Have a nice day Leo
by lalvarez
Wed Jan 09, 2013 8:33 pm
Forum: ROMS Installation
Topic: Compile ROMS problem via cygwin
Replies: 27
Views: 8433

Compile ROMS problem via cygwin

Hello Everyone I´m installing ROMS via CYGWIN. I´ve followed the instructions of the Tutorial for Windows and I´ve got to the Compile ROMS process in order to get the executable oceanS file; when I do so, I get this message: ./build.bash: line 40: $'\r': command not found ./build.bash: line 43: $'\r...
by lalvarez
Wed Jan 09, 2013 5:01 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

I have succesfully install the netcdf & netcdf-fortran

Thank a lot Mark & Kate
by lalvarez
Mon Dec 24, 2012 3:11 am
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Hi Mark

Thanks for the news on my birthday, jaja. When the make chech failed, i didnot run the make install, i´ll finish to install the netcdf for tomorrow, i hope.

Thanks a lot

Leo
by lalvarez
Fri Dec 21, 2012 6:30 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Hello Mark

I´ve sent You an e-mail with the make check results, i highlighted what i think is the problem

Thanks in advance
by lalvarez
Thu Dec 20, 2012 6:18 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Mark hello again First, pay no attention to my last post. Well things´re going like this I changed the #elifdef for the #elif defined in the ./oc/ocinternal.c, and then I made the nice ./configure ...etc again, and it ran well. But when I made de nice make check I got this: =========================...
by lalvarez
Thu Dec 20, 2012 5:17 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Hello Mark

Is there a specific way to uninstall the netcdf directories and libraries or this can be done directrly from the windows explorer?

Thanks in advance

Leo
by lalvarez
Tue Dec 18, 2012 5:48 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Hello M.Hadfield I´ve been working in the netcdf installing, first steps: 1) decompressing the netcdf-4.2.1.1.tar.gz - OK 2) nice ./configure ...etc - Ok 3) nice make - Not ok and at the end I get this ocinternal.c:28:2: error: invalid preprocessing directive #elifdef ocinternal.c:29:0: warning: "TM...
by lalvarez
Thu Dec 13, 2012 7:59 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Hello Kate I´ve been reading the M.Hadfield comment about the installing, i guess you´re right because he says: This is why the 4th command in each sequence is "cd ${version}" i think it is the directory where the ./configure has to take place I´m going to check once again the cygwin installing, not...
by lalvarez
Thu Dec 13, 2012 6:20 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Hello Kate In deed, when I write CC=gcc FC=gfortran LIBS="$(nc-config --libs)" CPPFLAGS="-I$(nc-config --includedir)" nice ./configure --disable-shared --prefix=/usr/local i got a message that says -bash: nf-config: not found I suppose that, what is written between quotations LIBS="$(nc-config --lib...
by lalvarez
Thu Dec 13, 2012 4:02 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

Kate & M.Hadfield

Thanks a lot for Your comments, I have include all the packages you recommend me in the cygwin installing. Today I´m going to check the configure, make etc. Hope it runs well and then ROMS

Thanks again
by lalvarez
Tue Dec 11, 2012 7:41 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

M.hadfield hello

One more question, Does all the files from the netcdf-4.2.1.1.tar.gz and netcdf-fortran-4.2.tar.gz must be decompressed in the same directory?

Thanks in advance
by lalvarez
Tue Dec 11, 2012 2:19 am
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Re: Netcdf downloading via Cygwin

M.hadfield

Thank You very much for that tip, i also was wondering how to install the fortran & C libreries
by lalvarez
Mon Dec 10, 2012 8:34 pm
Forum: ROMS Installation
Topic: Netcdf downloading via Cygwin
Replies: 64
Views: 289876

Netcdf downloading via Cygwin

Hello Everyone I´m trying to install ROMS via cygwin on a windows 7 OS (64 bits). I have already download and install cygwin, but when I try to download the netCDF (wget https://www.unidata.ucar.edu/downloads/netcdf/netcdf-4.2.1.1.tar.gz)I got an Error message that says ERROR: the certificate of "ww...
by lalvarez
Sat Apr 09, 2011 3:58 am
Forum: Ocean News
Topic: Top 10 Most Cited Article
Replies: 4
Views: 5709

Re: Top 10 Most Cited Article

Thank alot for the link, i guess i´ll need some time to read it.

Best regards
by lalvarez
Fri Apr 08, 2011 5:06 am
Forum: Ocean News
Topic: Top 10 Most Cited Article
Replies: 4
Views: 5709

Re: Top 10 Most Cited Article

Hello Arango,congratulations for the achievement. Is there any how I could get this publication.

Greatings
by lalvarez
Sat Feb 06, 2010 4:17 pm
Forum: ROMS FAQ
Topic: build.bash problem
Replies: 10
Views: 11459

Re: build.bash problem

I have had the same problem (errors and lines) when compilling the build.bash, trying to run the upwelling example, Did you get a solution for this? How the script have to be changed to get a good compillation?