Model Input Parameters: ROMS/TOMS version 3.6 Wednesday - November 20, 2013 - 9:12:48 PM ----------------------------------------------------------------------------- SHYF Operating system : Linux CPU/hardware : x86_64 Compiler system : ifort Compiler command : /lustre/inspur/mpi/openmpi-intel/bin/mpif90 Compiler flags : -heap-arrays -fp-model precise -ip -O3 -free -free -free Input Script : ocean_shiyf.in SVN Root URL : https://www.myroms.org/svn/src/trunk SVN Revision : Unversioned directory Local Root : /lustre/home/shiyongfangWKJ/roms/trunk Header Dir : /lustre/home/shiyongfangWKJ/roms/projects/roms_shiyf Header file : shiyf.h Analytical Dir: /lustre/home/shiyongfangWKJ/roms/projects/roms_shiyf Resolution, Grid 01: 0449x0160x016, Parallel Nodes: 9, Tiling: 003x003 Physical Parameters, Grid: 01 ============================= 1440 ntimes Number of timesteps for 3-D equations. 300.000 dt Timestep size (s) for 3-D equations. 30 ndtfast Number of timesteps for 2-D equations between each 3D timestep. 1 ERstr Starting ensemble/perturbation run number. 1 ERend Ending ensemble/perturbation run number. 0 nrrec Number of restart records to read from disk. T LcycleRST Switch to recycle time-records in restart file. 288 nRST Number of timesteps between the writing of data into restart fields. 1 ninfo Number of timesteps between print of information to standard output. T ldefout Switch to create a new output NetCDF file(s). 72 nHIS Number of timesteps between the writing fields into history file. 1 ntsAVG Starting timestep for the accumulation of output time-averaged data. 72 nAVG Number of timesteps between the writing of time-averaged data into averages file. 0.0000E+00 nl_tnu2(01) NLM Horizontal, harmonic mixing coefficient (m2/s) for tracer 01: temp 0.0000E+00 nl_tnu2(02) NLM Horizontal, harmonic mixing coefficient (m2/s) for tracer 02: salt 5.0000E+00 nl_visc2 NLM Horizontal, harmonic mixing coefficient (m2/s) for momentum. 1.0000E-06 Akt_bak(01) Background vertical mixing coefficient (m2/s) for tracer 01: temp 1.0000E-06 Akt_bak(02) Background vertical mixing coefficient (m2/s) for tracer 02: salt 1.0000E-05 Akv_bak Background vertical mixing coefficient (m2/s) for momentum. 5.0000E-06 Akk_bak Background vertical mixing coefficient (m2/s) for turbulent energy. 5.0000E-06 Akp_bak Background vertical mixing coefficient (m2/s) for turbulent generic statistical field. 3.000 gls_p GLS stability exponent. 1.500 gls_m GLS turbulent kinetic energy exponent. -1.000 gls_n GLS turbulent length scale exponent. 7.6000E-06 gls_Kmin GLS minimum value of turbulent kinetic energy. 1.0000E-12 gls_Pmin GLS minimum value of dissipation. 5.4770E-01 gls_cmu0 GLS stability coefficient. 1.4400E+00 gls_c1 GLS shear production coefficient. 1.9200E+00 gls_c2 GLS dissipation coefficient. -4.0000E-01 gls_c3m GLS stable buoyancy production coefficient. 1.0000E+00 gls_c3p GLS unstable buoyancy production coefficient. 1.0000E+00 gls_sigk GLS constant Schmidt number for TKE. 1.3000E+00 gls_sigp GLS constant Schmidt number for PSI. 1400.000 charnok_alpha Charnok factor for Zos calculation. 0.500 zos_hsig_alpha Factor for Zos calculation using Hsig(Awave). 0.250 sz_alpha Factor for Wave dissipation surface tke flux . 100.000 crgban_cw Factor for Craig/Banner surface tke flux. 3.0000E-04 rdrg Linear bottom drag coefficient (m/s). 3.0000E-03 rdrg2 Quadratic bottom drag coefficient. 2.0000E-02 Zob Bottom roughness (m). 2.0000E-02 Zos Surface roughness (m). 1 lmd_Jwt Jerlov water type. 2 Vtransform S-coordinate transformation equation. 4 Vstretching S-coordinate stretching function. 3.0000E+00 theta_s S-coordinate surface control parameter. 0.0000E+00 theta_b S-coordinate bottom control parameter. 25.000 Tcline S-coordinate surface/bottom layer width (m) used in vertical coordinate stretching. 1025.000 rho0 Mean density (kg/m3) for Boussinesq approximation. 0.000 dstart Time-stamp assigned to model initialization (days). 0.00 time_ref Reference time for units attribute (yyyymmdd.dd) 2.0000E+00 Tnudg(01) Nudging/relaxation time scale (days) for tracer 01: temp 2.0000E+00 Tnudg(02) Nudging/relaxation time scale (days) for tracer 02: salt 0.0000E+00 Znudg Nudging/relaxation time scale (days) for free-surface. 0.0000E+00 M2nudg Nudging/relaxation time scale (days) for 2D momentum. 0.0000E+00 M3nudg Nudging/relaxation time scale (days) for 3D momentum. 0.0000E+00 obcfac Factor between passive and active open boundary conditions. F VolCons(1) NLM western edge boundary volume conservation. T VolCons(2) NLM southern edge boundary volume conservation. T VolCons(3) NLM eastern edge boundary volume conservation. F VolCons(4) NLM northern edge boundary volume conservation. 14.000 T0 Background potential temperature (C) constant. 35.000 S0 Background salinity (PSU) constant. 1.000 gamma2 Slipperiness variable: free-slip (1.0) or no-slip (-1.0). T Hout(idFsur) Write out free-surface. T Hout(idUbar) Write out 2D U-momentum component. T Hout(idVbar) Write out 2D V-momentum component. T Hout(idUvel) Write out 3D U-momentum component. T Hout(idVvel) Write out 3D V-momentum component. T Hout(idWvel) Write out W-momentum component. T Hout(idOvel) Write out omega vertical velocity. T Hout(idTvar) Write out tracer 01: temp T Hout(idTvar) Write out tracer 02: salt T Aout(idFsur) Write out averaged free-surface. T Aout(idUbar) Write out averaged 2D U-momentum component. T Aout(idVbar) Write out averaged 2D V-momentum component. T Aout(idUvel) Write out averaged 3D U-momentum component. T Aout(idVvel) Write out averaged 3D V-momentum component. T Aout(idWvel) Write out averaged W-momentum component. T Aout(idOvel) Write out averaged omega vertical velocity. T Aout(idTvar) Write out averaged tracer 01: temp T Aout(idTvar) Write out averaged tracer 02: salt Output/Input Files: Output Restart File: ocean_rst.nc Output History File: ocean_his.nc Output Averages File: ocean_avg.nc Input Grid File: shiyf_grd.nc Input Nonlinear Initial File: shiyf_ini.nc Input Forcing File 01: shiyf_frc.nc Input Boundary File: shiyf_bry.nc Tile partition information for Grid 01: 0449x0160x0016 tiling: 003x003 tile Istr Iend Jstr Jend Npts 0 1 150 1 53 127200 1 151 300 1 53 127200 2 301 449 1 53 126352 3 1 150 54 107 129600 4 151 300 54 107 129600 5 301 449 54 107 128736 6 1 150 108 160 127200 7 151 300 108 160 127200 8 301 449 108 160 126352 Tile minimum and maximum fractional grid coordinates: (interior points only) tile Xmin Xmax Ymin Ymax grid 0 0.50 150.50 0.50 53.50 RHO-points 1 150.50 300.50 0.50 53.50 RHO-points 2 300.50 449.50 0.50 53.50 RHO-points 3 0.50 150.50 53.50 107.50 RHO-points 4 150.50 300.50 53.50 107.50 RHO-points 5 300.50 449.50 53.50 107.50 RHO-points 6 0.50 150.50 107.50 160.50 RHO-points 7 150.50 300.50 107.50 160.50 RHO-points 8 300.50 449.50 107.50 160.50 RHO-points 0 1.00 150.50 0.50 53.50 U-points 1 150.50 300.50 0.50 53.50 U-points 2 300.50 449.00 0.50 53.50 U-points 3 1.00 150.50 53.50 107.50 U-points 4 150.50 300.50 53.50 107.50 U-points 5 300.50 449.00 53.50 107.50 U-points 6 1.00 150.50 107.50 160.50 U-points 7 150.50 300.50 107.50 160.50 U-points 8 300.50 449.00 107.50 160.50 U-points 0 0.50 150.50 1.00 53.50 V-points 1 150.50 300.50 1.00 53.50 V-points 2 300.50 449.50 1.00 53.50 V-points 3 0.50 150.50 53.50 107.50 V-points 4 150.50 300.50 53.50 107.50 V-points 5 300.50 449.50 53.50 107.50 V-points 6 0.50 150.50 107.50 160.00 V-points 7 150.50 300.50 107.50 160.00 V-points 8 300.50 449.50 107.50 160.00 V-points Maximum halo size in XI and ETA directions: HaloSizeI(1) = 324 HaloSizeJ(1) = 132 TileSide(1) = 156 TileSize(1) = 9360 Lateral Boundary Conditions: NLM ============================ Variable Grid West Edge South Edge East Edge North Edge --------- ---- ---------- ---------- ---------- ---------- zeta 1 Closed Clamped Clamped Closed ubar 1 Closed Clamped Clamped Closed vbar 1 Closed Clamped Clamped Closed u 1 Closed Clamped Clamped Closed v 1 Closed Clamped Clamped Closed temp 1 Closed Clamped Clamped Closed salt 1 Closed Clamped Clamped Closed tke 1 Closed Clamped Clamped Closed Activated C-preprocessing Options: SHYF SHYF ANA_BSFLUX Analytical kinematic bottom salinity flux. ANA_BTFLUX Analytical kinematic bottom temperature flux. ASSUMED_SHAPE Using assumed-shape arrays. AVERAGES Writing out time-averaged nonlinear model fields. CURVGRID Orthogonal curvilinear grid. DIFF_GRID Horizontal diffusion coefficient scaled by grid size. DJ_GRADPS Parabolic Splines density Jacobian (Shchepetkin, 2002). DOUBLE_PRECISION Double precision arithmetic. GLS_MIXING Generic Length-Scale turbulence closure. KANTHA_CLAYSON Kantha and Clayson stability function formulation. MASKING Land/Sea masking. MIX_GEO_TS Mixing of tracers along geopotential surfaces. MIX_S_UV Mixing of momentum along constant S-surfaces. MPI MPI distributed-memory configuration. NONLINEAR Nonlinear Model. NONLIN_EOS Nonlinear Equation of State for seawater. NO_WRITE_GRID Not Writing grid arrays into NetCDF ouput files. N2S2_HORAVG Horizontal smoothing of buoyancy and shear. POWER_LAW Power-law shape time-averaging barotropic filter. PROFILE Time profiling activated . K_GSCHEME Third-order upstream advection of TKE fields. RADIATION_2D Use tangential phase speed in radiation conditions. RST_SINGLE Single precision fields in restart NetCDF file. SALINITY Using salinity. SCORRECTION Surface salinity flux correction. SOLAR_SOURCE Solar Radiation Source Term. SOLVE3D Solving 3D Primitive Equations. SPLINES Conservative parabolic spline reconstruction. TS_U3HADVECTION Third-order upstream horizontal advection of tracers. TS_C4VADVECTION Fourth-order centered vertical advection of tracers. TS_DIF2 Harmonic mixing of tracers. UV_ADV Advection of momentum. UV_COR Coriolis term. UV_U3HADVECTION Third-order upstream horizontal advection of 3D momentum. UV_C4VADVECTION Fourth-order centered vertical advection of momentum. UV_VIS2 Harmonic mixing of momentum. VAR_RHO_2D Variable density barotropic mode. VISC_GRID Horizontal viscosity coefficient scaled by grid size. CHECKDEFS - no bottom stress formulation is selected. Elapsed CPU time (seconds): ROMS/TOMS - Output NetCDF summary for Grid 01: ROMS/TOMS - Configuration error ..... exit_flag: 5 ERROR: Illegal model configuration.