bio_toy.h

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/*
** git $id$
*******************************************************************************
** copyright(c) 2002-2025 the roms group                                    **
**   licensed under a mit/x style license                                    **
**   see license_roms.md                                                     **
*******************************************************************************
**
** options one-dimensional(vertical) biology toy.
**
** application flag:   bio_toy
** input script:       roms_bio_toy.in
**                     biofennel.in, ecosim.in, npzd_franks.in, npzd_powell.in
*/
 
#define UV_ADV
#define UV_SADVECTION
#define UV_COR
#define UV_QDRAG
#define DJ_GRADPS
#define SPLINES_VDIFF
#define SPLINES_VVISC
#define SOLAR_SOURCE
#define NONLIN_EOS
#define SALINITY
#define AVERAGES
#define SOLVE3D
 
#define LMD_MIXING
#ifdef LMD_MIXING
# define LMD_RIMIX
# define LMD_CONVEC
# define LMD_SKPP
# define LMD_BKPP
# define LMD_NONLOCAL
# define RI_SPLINES
#endif
 
#define BULK_FLUXES
#ifdef BULK_FLUXES
# define LONGWAVE
# define ANA_RAIN
#else
# define ANA_SMFLUX
# define ANA_STFLUX
#endif
 
#define ANA_SSFLUX
#define ANA_BSFLUX
#define ANA_BTFLUX
 
/*
**  biological model options.
*/
 
#define BIO_FENNEL
#undef  ECOSIM
#undef  NEMURO
#undef  NPZD_FRANKS
#undef  NPZD_IRON
#undef  NPZD_POWELL
 
#ifdef BIO_FENNEL
# define CARBON
# define DENITRIFICATION
# define BIO_SEDIMENT
# define DIAGNOSTICS_BIO
#endif
 
#if defined ECOSIM || defined BIO_FENNEL
# define ANA_SPFLUX
# define ANA_BPFLUX
# define ANA_CLOUD
#endif
 
#if defined NEMURO
# define HOLLING_GRAZING
# undef  IVLEV_EXPLICIT
# define ANA_SPFLUX
# define ANA_BPFLUX
#endif
 
#if defined NPZD_FRANKS || defined NPZD_POWELL
# define ANA_SPFLUX
# define ANA_BPFLUX
#endif
 
#if defined NPZD_IRON
# define ANA_SPFLUX
# define ANA_BPFLUX
# undef  IRON_LIMIT
# undef  IRON_RELAX
#endif
 
#if defined BULK_FLUXES || defined ECOSIM
# define ANA_CLOUD
# define PAPA_CLM
#endif